Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   R4712_RS05260 Genome accession   NZ_CP137110
Coordinates   1038554..1039312 (-) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2041     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1033554..1044312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4712_RS05235 pth 1033587..1034156 (-) 570 WP_000163932.1 aminoacyl-tRNA hydrolase -
  R4712_RS05240 ychF 1034227..1035342 (-) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  R4712_RS05245 - 1035426..1035620 (-) 195 WP_000285194.1 DUF951 domain-containing protein -
  R4712_RS05250 dnaN 1035685..1036821 (-) 1137 WP_000581157.1 DNA polymerase III subunit beta -
  R4712_RS05255 dnaA 1036980..1038341 (-) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  R4712_RS05260 spo0J 1038554..1039312 (-) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator
  R4712_RS05265 htrA 1039370..1040551 (-) 1182 WP_000681601.1 S1C family serine protease Regulator
  R4712_RS05270 rlmH 1040734..1041213 (+) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R4712_RS05280 comC/comC1 1041495..1041620 (+) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  R4712_RS05285 comD/comD1 1041641..1042966 (+) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  R4712_RS05290 comE 1042963..1043715 (+) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=895859 R4712_RS05260 WP_000410383.1 1038554..1039312(-) (spo0J) [Streptococcus pneumoniae strain 16H2041]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=895859 R4712_RS05260 WP_000410383.1 1038554..1039312(-) (spo0J) [Streptococcus pneumoniae strain 16H2041]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGTTTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504