Detailed information NTG0895262

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: R4709_RS06460
• Genome accession: NZ_CP137102
• Coordinates: 1263278..1263682 (+)
• Length: 134 a.a.
• NCBI ID: WP_000588030.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain 16H3071-2
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1258278..1268682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4709_RS06435	-	1259402..1260460 (+)	1059	WP_044812807.1	zinc-dependent alcohol dehydrogenase family protein	-
R4709_RS06440	-	1260611..1260976 (+)	366	WP_000286415.1	DUF1033 family protein	-
R4709_RS06445	comGA/cglA/cilD	1261052..1261993 (+)	942	WP_000249567.1	competence type IV pilus ATPase ComGA	Machinery gene
R4709_RS06450	comGB/cglB	1261941..1262957 (+)	1017	WP_078132972.1	competence type IV pilus assembly protein ComGB	Machinery gene
R4709_RS06455	comGC/cglC	1262959..1263285 (+)	327	WP_000738625.1	competence type IV pilus major pilin ComGC	Machinery gene
R4709_RS06460	comGD/cglD	1263278..1263682 (+)	405	WP_000588030.1	competence type IV pilus minor pilin ComGD	Machinery gene
R4709_RS06465	comGE/cglE	1263645..1263947 (+)	303	WP_000413382.1	competence type IV pilus minor pilin ComGE	Machinery gene
R4709_RS06470	comGF/cglF	1263910..1264371 (+)	462	WP_000250539.1	competence type IV pilus minor pilin ComGF	Machinery gene
R4709_RS06475	comGG/cglG	1264349..1264795 (+)	447	WP_001811371.1	competence type IV pilus minor pilin ComGG	Machinery gene
R4709_RS06480	-	1264898..1265492 (+)	595	Protein_1266	class I SAM-dependent methyltransferase	-
R4709_RS06485	comYH	1265553..1266506 (+)	954	WP_044813830.1	class I SAM-dependent methyltransferase	Machinery gene
R4709_RS06490	-	1266557..1267747 (+)	1191	WP_050085692.1	acetate kinase	-
R4709_RS06495	-	1267748..1267879 (+)	132	WP_000768904.1	hypothetical protein	-
R4709_RS06500	rnpA	1267896..1268267 (+)	372	WP_000739246.1	ribonuclease P protein component	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 14668.85 Da
• Isoelectric Point: 10.2164

>NTDB_id=895262 R4709_RS06460 WP_000588030.1 1263278..1263682(+) (comGD/cglD) [Streptococcus pneumoniae strain 16H3071-2]
MIKAFTMLESLLVLGLVSILALGLSSSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTLSNGSQKLTV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 405 bp

>NTDB_id=895262 R4709_RS06460 WP_000588030.1 1263278..1263682(+) (comGD/cglD) [Streptococcus pneumoniae strain 16H3071-2]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGACTTGTGAGTATCCTTGCCTTGGGCTTATCCAGCTC
TGTCCAGTCCACTTTTGCAGCAGTAGAGGAGCAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTAAATTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGACAGTT
CCTAAAGGAATTCAGGCACCATCAGGCCAAAGTATTACATTTGACCGAGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus pneumoniae TIGR4	97.761	100	0.978
comGD/cglD	Streptococcus pneumoniae Rx1	97.015	100	0.97
comGD/cglD	Streptococcus pneumoniae D39	97.015	100	0.97
comGD/cglD	Streptococcus pneumoniae R6	97.015	100	0.97
comGD/cglD	Streptococcus mitis SK321	96.269	100	0.963
comGD/cglD	Streptococcus mitis NCTC 12261	96.992	99.254	0.963
comYD	Streptococcus gordonii str. Challis substr. CH1	59.055	94.776	0.56
comYD	Streptococcus mutans UA140	48.438	95.522	0.463
comYD	Streptococcus mutans UA159	48.438	95.522	0.463