Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   R3L12_RS11145 Genome accession   NZ_CP137057
Coordinates   2344303..2344767 (-) Length   154 a.a.
NCBI ID   WP_208477785.1    Uniprot ID   -
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2343214..2344161 2344303..2344767 flank 142


Gene organization within MGE regions


Location: 2343214..2344767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS11140 (R3L12_11120) - 2343214..2344161 (+) 948 WP_055415621.1 IS5 family transposase -
  R3L12_RS11145 (R3L12_11125) comP 2344303..2344767 (-) 465 WP_208477785.1 pilin Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 15832.10 Da        Isoelectric Point: 5.0515

>NTDB_id=894472 R3L12_RS11145 WP_208477785.1 2344303..2344767(-) (comP) [Acinetobacter soli strain SNUBHAB0075]
MNVQKGFTLIELMIVVAIIGILAAIAIPAYQNYTIRARVTEAITALAPAKTAVSENIINNNQTTLGATSCNGVDSIPATP
NVAERTAENVCSSGILSVVTTQKAGTVTLTLTPTPVTEGSGTSAVVKGVTWVCSTAAESFKYVPAECRNETSGG

Nucleotide


Download         Length: 465 bp        

>NTDB_id=894472 R3L12_RS11145 WP_208477785.1 2344303..2344767(-) (comP) [Acinetobacter soli strain SNUBHAB0075]
ATGAATGTACAAAAAGGTTTTACCTTGATTGAATTGATGATCGTGGTGGCGATTATTGGTATTTTGGCGGCGATTGCGAT
TCCTGCTTATCAGAACTACACTATAAGAGCTCGTGTTACAGAAGCTATTACTGCTTTGGCGCCTGCTAAAACAGCTGTTA
GCGAGAATATAATTAATAATAATCAAACTACCCTAGGTGCTACATCTTGTAACGGAGTTGATTCTATTCCAGCGACCCCT
AATGTGGCCGAGAGAACTGCTGAAAATGTCTGTTCATCTGGCATACTTTCAGTTGTAACAACTCAAAAAGCAGGTACTGT
AACTTTAACTTTAACGCCAACACCAGTTACCGAGGGGTCGGGAACATCTGCTGTAGTTAAAGGTGTAACATGGGTTTGTT
CTACAGCTGCAGAAAGCTTTAAATATGTTCCAGCGGAGTGCCGTAATGAAACCTCTGGCGGTTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(36-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

51.282

100

0.519
  pilA2 Legionella pneumophila str. Paris

52.74

94.805

0.5
  pilA2 Legionella pneumophila strain ERS1305867

52.055

94.805

0.494
  pilA Ralstonia pseudosolanacearum GMI1000

46.341

100

0.494
  pilE Neisseria gonorrhoeae strain FA1090

37.427

100

0.416
  pilA Pseudomonas aeruginosa PAK

35.185

100

0.37