Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AAVD18_RS20655 Genome accession   NZ_CP154893
Coordinates   3940231..3940947 (+) Length   238 a.a.
NCBI ID   WP_013351377.1    Uniprot ID   A0A9P1NGV6
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3935231..3945947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS20625 (AAVD18_20625) - 3935410..3935787 (+) 378 WP_013351371.1 DUF1992 domain-containing protein -
  AAVD18_RS20630 (AAVD18_20630) - 3935797..3936228 (-) 432 WP_013351372.1 Hsp20/alpha crystallin family protein -
  AAVD18_RS20635 (AAVD18_20635) - 3936244..3936486 (-) 243 WP_013351373.1 spore germination protein -
  AAVD18_RS20640 (AAVD18_20640) - 3936501..3936761 (-) 261 WP_007408496.1 spore germination protein -
  AAVD18_RS20645 (AAVD18_20645) treP 3937031..3938446 (+) 1416 WP_345808519.1 PTS system trehalose-specific EIIBC component -
  AAVD18_RS20650 (AAVD18_20650) treC 3938522..3940207 (+) 1686 WP_061573673.1 alpha,alpha-phosphotrehalase -
  AAVD18_RS20655 (AAVD18_20655) treR 3940231..3940947 (+) 717 WP_013351377.1 trehalose operon repressor Regulator
  AAVD18_RS20660 (AAVD18_20660) - 3941080..3941745 (+) 666 WP_013351378.1 NAD(P)H-dependent oxidoreductase -
  AAVD18_RS20665 (AAVD18_20665) - 3941780..3942541 (-) 762 WP_061573674.1 YibE/F family protein -
  AAVD18_RS20670 (AAVD18_20670) - 3942538..3943677 (-) 1140 WP_013351380.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27440.54 Da        Isoelectric Point: 7.3799

>NTDB_id=894472 AAVD18_RS20655 WP_013351377.1 3940231..3940947(+) (treR) [Bacillus amyloliquefaciens strain Fad 11/2]
MKVNKYITIYKDMVQQIESGMRKAEDVLPSENDLCDQYGASRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETKTTVHRLGLIPPPAEAAKELGTKADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEEELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=894472 AAVD18_RS20655 WP_013351377.1 3940231..3940947(+) (treR) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGAAAGTGAATAAATACATCACAATCTATAAAGACATGGTGCAGCAAATCGAAAGCGGCATGCGGAAGGCGGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCGCATCAAGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTTAAGGAGCTTTCGGAAACGCTCGGAAAAGAGACGAAAACGACGGTTCACCGTCTCGGGCTGATTCCGCC
TCCCGCCGAAGCCGCAAAAGAGCTTGGCACAAAGGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGGCGGATTGACG
GAGAACACATTATTTTGGACAAGGATTACTTTGTGAAAAAGCACGTTCCTCTTTTGACGAAGGCGATTTGCGAAGATTCG
ATTTACGAGTATCTCGAAGAAGAGCTCGGTCTGTCAATCAGCTACGCGCAAAAAGAAATTGTCGTGGAGCCGGCAGGGGA
AGAAGACCGAAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGTGTGTTTTTGGAGGACACCA
GCCTCTTTCAATATACGGAAAGCCGGCACAGGCTCGATAAATTTCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NGV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424