Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   R0Q54_RS08540 Genome accession   NZ_CP136992
Coordinates   1584678..1584797 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain J46     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579678..1589797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0Q54_RS08515 (R0Q54_08515) albG 1579842..1580543 (+) 702 WP_014481222.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  R0Q54_RS08520 (R0Q54_08520) ywhL 1580549..1581925 (-) 1377 WP_014481223.1 YncE family protein -
  R0Q54_RS08525 (R0Q54_08525) ywhK 1581964..1583319 (-) 1356 WP_014481224.1 YncE family protein -
  R0Q54_RS08530 (R0Q54_08530) - 1583316..1583546 (-) 231 Protein_1675 hypothetical protein -
  R0Q54_RS08535 (R0Q54_08535) rapF 1583549..1584694 (+) 1146 WP_014481226.1 response regulator aspartate phosphatase RapF Regulator
  R0Q54_RS08540 (R0Q54_08540) phrF 1584678..1584797 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  R0Q54_RS08545 (R0Q54_08545) - 1584895..1585322 (+) 428 Protein_1678 YbaK/EbsC family protein -
  R0Q54_RS08550 (R0Q54_08550) speB 1585387..1586259 (-) 873 WP_003227545.1 agmatinase -
  R0Q54_RS08555 (R0Q54_08555) speE 1586320..1587150 (-) 831 WP_003227543.1 spermidine synthase -
  R0Q54_RS08560 (R0Q54_08560) pbpG 1587353..1589428 (+) 2076 WP_015384942.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=894047 R0Q54_RS08540 WP_009968329.1 1584678..1584797(+) (phrF) [Bacillus subtilis strain J46]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=894047 R0Q54_RS08540 WP_009968329.1 1584678..1584797(+) (phrF) [Bacillus subtilis strain J46]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487