Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   AAH980_RS08810 Genome accession   NZ_CP154856
Coordinates   1898492..1899007 (+) Length   171 a.a.
NCBI ID   WP_151863717.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain Ab25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1893492..1904007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH980_RS08790 (AAH980_08790) - 1893840..1895300 (+) 1461 WP_002051328.1 amino acid permease -
  AAH980_RS08795 (AAH980_08795) - 1895578..1896783 (+) 1206 WP_284080680.1 RtcB family protein -
  AAH980_RS08800 (AAH980_08800) - 1896787..1896945 (+) 159 WP_004712046.1 hypothetical protein -
  AAH980_RS08805 (AAH980_08805) omp38 1897069..1898112 (-) 1044 WP_004712042.1 outer membrane protein Omp38 -
  AAH980_RS08810 (AAH980_08810) fimT 1898492..1899007 (+) 516 WP_151863717.1 GspH/FimT family pseudopilin Machinery gene
  AAH980_RS08815 (AAH980_08815) - 1899116..1900291 (+) 1176 WP_042075995.1 thiolase family protein -
  AAH980_RS08820 (AAH980_08820) - 1900417..1900860 (+) 444 WP_002051396.1 VOC family protein -
  AAH980_RS08825 (AAH980_08825) - 1900913..1901266 (-) 354 WP_002051463.1 SMR family transporter -
  AAH980_RS08830 (AAH980_08830) - 1901345..1901830 (-) 486 WP_108679727.1 DUF934 domain-containing protein -
  AAH980_RS08835 (AAH980_08835) - 1901823..1903466 (-) 1644 WP_284080678.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19410.60 Da        Isoelectric Point: 8.8332

>NTDB_id=893609 AAH980_RS08810 WP_151863717.1 1898492..1899007(+) (fimT) [Acinetobacter nosocomialis strain Ab25]
MFRSPGFTIVELSITLVILVIMSVIAIPLYHQFMASVELKNTSRVLTIHIQKAKSDAIIKHKNIVLCPSSDQVICNTDWN
KHLISFVDSNRNLQHDLNEELLTSIDLNHTYGSMKLQRFGKKQNSIVFQGSSGLPIESNGSFIYCSYDQLKNFKLVLSKM
GHVRVEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=893609 AAH980_RS08810 WP_151863717.1 1898492..1899007(+) (fimT) [Acinetobacter nosocomialis strain Ab25]
ATGTTTAGATCTCCTGGTTTTACTATAGTTGAGCTCTCTATAACCCTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAATTAAAAAATACTTCGCGTGTACTCACAATTCATATACAAAAAGCCA
AATCGGACGCAATTATTAAGCATAAGAACATTGTTCTGTGTCCAAGTTCAGATCAGGTAATCTGTAATACAGATTGGAAT
AAACACTTAATCAGCTTCGTAGATAGTAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTAACCTCTATAGATCT
TAACCATACTTATGGTTCTATGAAATTACAACGTTTTGGTAAAAAACAAAATAGTATTGTTTTTCAAGGAAGCTCGGGAC
TTCCAATCGAGTCTAATGGTAGTTTTATTTACTGTTCTTATGATCAGCTTAAAAATTTTAAATTAGTTCTTAGCAAAATG
GGGCATGTGCGTGTCGAAGAATTAAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(49-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427