Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   RJD36_RS08855 Genome accession   NZ_CP136943
Coordinates   1748986..1749696 (-) Length   236 a.a.
NCBI ID   WP_003065770.1    Uniprot ID   A0AAW6YI35
Organism   Streptococcus pasteurianus strain WUSP082     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1743986..1754696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS08840 (RJD36_08840) rnc 1745891..1746577 (-) 687 WP_003065764.1 ribonuclease III -
  RJD36_RS08845 (RJD36_08845) vicX 1746831..1747640 (-) 810 WP_003065766.1 MBL fold metallo-hydrolase Regulator
  RJD36_RS08850 (RJD36_08850) vicK 1747641..1748993 (-) 1353 WP_003065768.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RJD36_RS08855 (RJD36_08855) vicR 1748986..1749696 (-) 711 WP_003065770.1 response regulator YycF Regulator
  RJD36_RS08860 (RJD36_08860) - 1750001..1750765 (+) 765 WP_003065772.1 amino acid ABC transporter ATP-binding protein -
  RJD36_RS08865 (RJD36_08865) - 1750776..1751588 (+) 813 WP_069788880.1 transporter substrate-binding domain-containing protein -
  RJD36_RS08870 (RJD36_08870) - 1751605..1752309 (+) 705 WP_003065775.1 amino acid ABC transporter permease -
  RJD36_RS08875 (RJD36_08875) - 1752321..1752968 (+) 648 WP_003065777.1 amino acid ABC transporter permease -
  RJD36_RS08880 (RJD36_08880) - 1753060..1753668 (-) 609 WP_003065779.1 TVP38/TMEM64 family protein -
  RJD36_RS08885 (RJD36_08885) - 1753916..1754218 (-) 303 WP_003065782.1 PepSY domain-containing protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27119.93 Da        Isoelectric Point: 4.7040

>NTDB_id=893557 RJD36_RS08855 WP_003065770.1 1748986..1749696(-) (vicR) [Streptococcus pasteurianus strain WUSP082]
MKKILIVDDEKPISDIIKFNLAKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDGLEVAKEVRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTENIETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIE
LTHREFELLHHLATHMGQVMTREYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKSYE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=893557 RJD36_RS08855 WP_003065770.1 1748986..1749696(-) (vicR) [Streptococcus pasteurianus strain WUSP082]
ATGAAAAAAATTCTTATCGTGGATGATGAAAAACCAATTTCGGATATTATTAAATTTAATTTAGCTAAAGAAGGTTATGA
AACTGTAACGGCTTTTGATGGTCGTGAAGCTATTACAAAGTTTGAGGAAGAAAATCCAGATTTAATTATCCTGGATTTGA
TGTTGCCAGAGTTGGATGGGCTTGAAGTGGCTAAGGAAGTTCGCAAGACAAGTCATATTCCAATCATCATGTTGTCTGCT
AAGGATAGCGAGTTTGATAAAGTTATCGGTCTTGAAATTGGTGCAGATGACTATGTAACCAAACCATTTTCAAATCGTGA
ATTGTTGGCGCGTGTTAAAGCGCACCTTCGTCGTACAGAAAATATTGAAACAGCAGTTGCTGAAGAAAATGCTTCGGCTT
CAAATTCAGAAATCACAATTGGCGACTTAAAAATTTTACCAGATGCCTTTGTAGCACAAAAACGTGGTGAAGATATCGAA
TTAACACACCGTGAGTTTGAATTGCTTCATCATTTGGCAACTCATATGGGACAAGTCATGACTCGTGAATATCTTTTGGA
AACCGTTTGGGGCTATGATTATTTTGGTGATGTGCGTACGGTTGATGTAACGATTCGTCGTTTACGCGAAAAAATTGAAG
ATACACCAAGCCGTCCAGAATATATTTTGACACGTCGGGGTGTTGGGTACTACATGAAGTCATATGAATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.678

100

0.907
  micA Streptococcus pneumoniae Cp1015

77.35

99.153

0.767
  covR Streptococcus salivarius strain HSISS4

47.414

98.305

0.466
  covR Lactococcus lactis subsp. lactis strain DGCC12653

45.69

98.305

0.449
  scnR Streptococcus mutans UA159

37.288

100

0.373