Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RJD36_RS08845 Genome accession   NZ_CP136943
Coordinates   1746831..1747640 (-) Length   269 a.a.
NCBI ID   WP_003065766.1    Uniprot ID   A0AAW6YDK1
Organism   Streptococcus pasteurianus strain WUSP082     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1741831..1752640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS08835 (RJD36_08835) smc 1742220..1745759 (-) 3540 WP_003065762.1 chromosome segregation protein SMC -
  RJD36_RS08840 (RJD36_08840) rnc 1745891..1746577 (-) 687 WP_003065764.1 ribonuclease III -
  RJD36_RS08845 (RJD36_08845) vicX 1746831..1747640 (-) 810 WP_003065766.1 MBL fold metallo-hydrolase Regulator
  RJD36_RS08850 (RJD36_08850) vicK 1747641..1748993 (-) 1353 WP_003065768.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RJD36_RS08855 (RJD36_08855) vicR 1748986..1749696 (-) 711 WP_003065770.1 response regulator YycF Regulator
  RJD36_RS08860 (RJD36_08860) - 1750001..1750765 (+) 765 WP_003065772.1 amino acid ABC transporter ATP-binding protein -
  RJD36_RS08865 (RJD36_08865) - 1750776..1751588 (+) 813 WP_069788880.1 transporter substrate-binding domain-containing protein -
  RJD36_RS08870 (RJD36_08870) - 1751605..1752309 (+) 705 WP_003065775.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30343.37 Da        Isoelectric Point: 5.8277

>NTDB_id=893555 RJD36_RS08845 WP_003065766.1 1746831..1747640(-) (vicX) [Streptococcus pasteurianus strain WUSP082]
MSENAFKYSILASGSTGNSFYVETPQKRFLIDAGLTGKKITSLLAEIDRKPEDLDAIFITHEHSDHIKGVGVLARRYNLD
VYANEKTWQMIDERNMIGKLDFAQKHIFERGKTLTLGDIDIESFGVSHDAVEPQFYRLMKDNKSFVILTDTGYVSDRMAG
IIENADGYLIESNHDVEILRSGAYPWSLKQRILSDKGHLSNEDGAGTMIRTIGNRTKKIYLGHLSKENNIKELAHMTMEN
NLIQADFGVGYDMKVFDTSPEEATPLTKL

Nucleotide


Download         Length: 810 bp        

>NTDB_id=893555 RJD36_RS08845 WP_003065766.1 1746831..1747640(-) (vicX) [Streptococcus pasteurianus strain WUSP082]
ATGTCTGAAAATGCTTTTAAATATAGTATTTTAGCCTCCGGTTCAACTGGAAATTCTTTTTATGTGGAAACACCACAAAA
ACGTTTTTTGATTGATGCGGGTTTGACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCAGAGGACT
TAGATGCTATTTTTATTACACACGAACATTCTGACCATATCAAAGGGGTTGGGGTGTTAGCACGTCGTTATAATCTTGAT
GTTTATGCGAATGAAAAAACGTGGCAAATGATTGATGAGCGAAATATGATTGGAAAGCTTGATTTCGCTCAAAAACATAT
TTTTGAACGTGGTAAAACATTGACACTTGGTGACATTGATATTGAAAGTTTTGGTGTTAGCCACGATGCCGTTGAGCCAC
AATTTTATCGTTTGATGAAAGATAATAAATCGTTTGTTATCTTAACAGATACAGGTTATGTTAGTGACCGCATGGCAGGA
ATTATTGAAAATGCTGACGGTTACTTAATTGAATCAAATCATGATGTTGAGATTTTACGTTCTGGTGCTTATCCGTGGAG
TTTGAAACAACGTATCCTATCTGATAAAGGGCACTTGTCAAACGAAGACGGTGCTGGGACAATGATTCGAACCATTGGAA
ATCGCACGAAGAAAATTTACCTTGGACATTTGAGTAAAGAAAACAATATCAAAGAATTGGCTCACATGACCATGGAAAAT
AATCTTATTCAAGCTGACTTTGGGGTTGGTTATGACATGAAAGTCTTTGACACCTCACCAGAGGAAGCAACACCATTAAC
AAAGTTATAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.952

100

0.77