Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R1T10_RS03305 Genome accession   NZ_CP136807
Coordinates   636697..638193 (+) Length   498 a.a.
NCBI ID   WP_002238765.1    Uniprot ID   -
Organism   Neisseria meningitidis NMB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 631697..643193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T10_RS03290 - 634097..634264 (+) 168 WP_009346312.1 hypothetical protein -
  R1T10_RS03295 putP 634354..635880 (-) 1527 WP_002227025.1 sodium/proline symporter PutP -
  R1T10_RS03300 - 636363..636683 (+) 321 WP_002216505.1 accessory factor UbiK family protein -
  R1T10_RS03305 comM 636697..638193 (+) 1497 WP_002238765.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R1T10_RS03310 ftsN 638299..639162 (+) 864 WP_002244455.1 cell division protein FtsN -
  R1T10_RS03315 dsbA1 639165..639809 (+) 645 WP_002220358.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  R1T10_RS03320 - 639842..640663 (+) 822 WP_002244454.1 undecaprenyl-diphosphate phosphatase -
  R1T10_RS03335 - 641245..642462 (-) 1218 WP_017201236.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53611.68 Da        Isoelectric Point: 7.0035

>NTDB_id=892842 R1T10_RS03305 WP_002238765.1 636697..638193(+) (comM) [Neisseria meningitidis NMB]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECQVPQMPSENTKLPDLVDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSASVLERVIAARDKQYARQGKVNAALSVSELDSQARIQKEAQEALGNLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAVGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=892842 R1T10_RS03305 WP_002238765.1 636697..638193(+) (comM) [Neisseria meningitidis NMB]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCGCATTTCAACATCGTCGGGCTGCCCGATACGGAAGTAAAGGAAAGTCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCGCCAAAAAAATTACCGTCAACCTCGCCCCCGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCGCCCGAAAAACTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGCTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAACGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCCCATTTGAACGGCATCGAACCTTTGGCGCAAACCGAATGCCAAGTTCCTCAGATGCCGTCTGAAAA
CACCAAATTGCCCGACCTCGTCGATGTCAAGGGTCAGCACACTGCCCGCCTTGCTTTGGAAATCGCTGCCGCAGGCGGAC
ACAGCCTCTTGATGATGGGTCCGCCAGGAACGGGCAAGTCTATGCTCTCCCAACGGCTGCCAGGCATCCTGCCGCCGCTG
ACCGAAGACGAATTGGTTGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCACCAGCAACAACTCGACAGCAACCGTCC
TTTCCGCAGTCCGCATCACAGCGCCAGCGCGGCGGCTATGGTCGGCGGCGGTTCGGATCCGCGTCCGGGCGAAATTTCAT
TGGCGCATCACGGCGTTTTATTTTTGGATGAATTGCCCGAGTTCGACCGCAAAGTTTTAGAAGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCCGCCAAATTCCAACTTGTCGCCGCCATGAA
CCCCTGCCCGTGCGGCTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACACCCGAAAGCGTCGCGCGTTACCGCAGCA
AAATTTCCGGCCCGTTGCTTGACCGCATCGATTTGACCATCGAAGTCCCGAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCAGGGGAAAGCAGCGCGTCCGTTTTGGAACGCGTTATCGCCGCCAGAGACAAACAATACGCACGGCAAGGCAAAGT
GAATGCCGCTTTGAGCGTCAGCGAACTCGATTCCCAAGCCCGCATCCAAAAAGAAGCGCAGGAAGCCTTGGGCAACCTGT
TGGAAAAACTTTCCCTCTCTGCCCGCAGCTTCCACCGCATCATGCGCGTGGCGCGTACGTTGGCGGATTTGGCAGGCGAC
GAAGAAGTCGGCAGAAGCCATGTTATGAAAGCCGTGGGCTTCCGTCGTGCTTTATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.988

100

0.534
  comM Vibrio campbellii strain DS40M4

52.515

99.799

0.524
  comM Glaesserella parasuis strain SC1401

49.602

100

0.5
  comM Haemophilus influenzae Rd KW20

49.699

100

0.498
  comM Legionella pneumophila str. Paris

47.117

100

0.476
  comM Legionella pneumophila strain ERS1305867

47.117

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.942

100

0.434