Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MHOCP_RS00705 Genome accession   NZ_CP136421
Coordinates   123303..123743 (+) Length   146 a.a.
NCBI ID   WP_338824543.1    Uniprot ID   -
Organism   Moorella humiferrea strain OCP     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 118303..128743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHOCP_RS00670 (MHOCP_01330) yedF 119457..120038 (+) 582 WP_338824534.1 sulfurtransferase-like selenium metabolism protein YedF -
  MHOCP_RS00675 (MHOCP_01340) - 120052..120933 (+) 882 WP_338824536.1 HEAT repeat domain-containing protein -
  MHOCP_RS00680 (MHOCP_01350) - 120938..121123 (+) 186 WP_338824537.1 DUF951 domain-containing protein -
  MHOCP_RS00685 (MHOCP_01360) - 121110..121619 (-) 510 WP_338824538.1 CGGC domain-containing protein -
  MHOCP_RS00690 (MHOCP_01370) - 121801..122598 (+) 798 WP_338824539.1 acyl-ACP thioesterase domain-containing protein -
  MHOCP_RS00695 (MHOCP_01380) - 122618..122878 (+) 261 WP_338824540.1 DUF5395 family protein -
  MHOCP_RS00700 (MHOCP_01390) rpsF 122994..123290 (+) 297 WP_106005062.1 30S ribosomal protein S6 -
  MHOCP_RS00705 (MHOCP_01400) ssbA 123303..123743 (+) 441 WP_338824543.1 single-stranded DNA-binding protein Machinery gene
  MHOCP_RS00710 (MHOCP_01410) rpsR 123766..123993 (+) 228 WP_106005064.1 30S ribosomal protein S18 -
  MHOCP_RS00715 (MHOCP_01420) - 124077..125060 (+) 984 WP_338824545.1 YybS family protein -
  MHOCP_RS00720 (MHOCP_01430) rplI 125067..125519 (+) 453 WP_338824546.1 50S ribosomal protein L9 -
  MHOCP_RS00725 (MHOCP_01440) lonC 125525..127456 (+) 1932 WP_338824547.1 Lon family ATP-dependent protease -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16097.96 Da        Isoelectric Point: 4.6616

>NTDB_id=890898 MHOCP_RS00705 WP_338824543.1 123303..123743(+) (ssbA) [Moorella humiferrea strain OCP]
MLNRVILIGRLTRDPELRYTASGVAVTTFTLAVDRNYVNQQGERGTDFIRITTWRKLAETCANHLNKGRLVAIEGRLQTR
TYETAEGQKRQATDVVADDVRFLDWPKDGRLSGGATPAGGMGGGDFSADFDDMGTEIDIGEDDLPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=890898 MHOCP_RS00705 WP_338824543.1 123303..123743(+) (ssbA) [Moorella humiferrea strain OCP]
ATGTTGAACCGGGTAATTTTAATCGGCCGCCTGACGCGGGACCCCGAACTGCGCTATACGGCCAGCGGCGTCGCCGTGAC
GACCTTTACCCTGGCGGTAGATCGTAATTATGTCAACCAGCAGGGGGAGCGGGGTACGGATTTCATCCGCATAACCACCT
GGCGAAAGCTGGCGGAAACCTGTGCCAACCATTTGAATAAAGGCCGCCTGGTGGCCATTGAAGGACGTCTGCAGACCCGT
ACCTATGAAACGGCAGAAGGGCAGAAACGCCAGGCCACCGACGTTGTGGCCGATGACGTTCGTTTTCTGGACTGGCCCAA
AGACGGCAGGCTTTCCGGAGGCGCCACCCCTGCCGGGGGAATGGGCGGCGGCGATTTTAGCGCGGATTTCGATGATATGG
GTACCGAAATTGACATAGGCGAGGACGATTTACCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.665

100

0.541
  ssb Latilactobacillus sakei subsp. sakei 23K

41.765

100

0.486
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.336

73.288

0.384
  ssb Neisseria meningitidis MC58

43.902

84.247

0.37
  ssbB Streptococcus sobrinus strain NIDR 6715-7

36.301

100

0.363
  ssbB/cilA Streptococcus pneumoniae TIGR4

36.301

100

0.363