Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RVY74_RS07835 Genome accession   NZ_CP136372
Coordinates   1517211..1517813 (-) Length   200 a.a.
NCBI ID   WP_002030800.1    Uniprot ID   A0A366GKC2
Organism   Bacillus mycoides strain PAMC 29434     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1512211..1522813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY74_RS07815 (RVY74_07815) dnaD 1512505..1513212 (+) 708 WP_000728546.1 DNA replication protein DnaD -
  RVY74_RS07820 (RVY74_07820) nth 1513228..1513875 (+) 648 WP_316281926.1 endonuclease III -
  RVY74_RS07825 (RVY74_07825) - 1513879..1514397 (+) 519 WP_316281927.1 YpoC family protein -
  RVY74_RS07830 (RVY74_07830) - 1514424..1517144 (-) 2721 WP_201066612.1 penicillin-binding protein 1A -
  RVY74_RS07835 (RVY74_07835) recU 1517211..1517813 (-) 603 WP_002030800.1 Holliday junction resolvase RecU Machinery gene
  RVY74_RS07840 (RVY74_07840) - 1517917..1518942 (+) 1026 WP_016101471.1 DUF2515 domain-containing protein -
  RVY74_RS07845 (RVY74_07845) - 1519286..1519432 (-) 147 WP_306302660.1 phage portal protein -
  RVY74_RS07850 (RVY74_07850) - 1519551..1519793 (+) 243 WP_002030820.1 hypothetical protein -
  RVY74_RS07855 (RVY74_07855) - 1519809..1520153 (+) 345 WP_002011864.1 YppE family protein -
  RVY74_RS07860 (RVY74_07860) - 1520179..1520370 (-) 192 WP_002030817.1 YppF family protein -
  RVY74_RS07865 (RVY74_07865) - 1520548..1521186 (+) 639 WP_201066613.1 YppG family protein -
  RVY74_RS07870 (RVY74_07870) - 1521343..1521774 (+) 432 WP_151304715.1 CotD family spore coat protein -
  RVY74_RS07875 (RVY74_07875) - 1521831..1522385 (+) 555 WP_063217946.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23347.59 Da        Isoelectric Point: 9.5601

>NTDB_id=890397 RVY74_RS07835 WP_002030800.1 1517211..1517813(-) (recU) [Bacillus mycoides strain PAMC 29434]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=890397 RVY74_RS07835 WP_002030800.1 1517211..1517813(-) (recU) [Bacillus mycoides strain PAMC 29434]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GKC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625