Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RVY74_RS06460 Genome accession   NZ_CP136372
Coordinates   1263641..1263964 (-) Length   107 a.a.
NCBI ID   WP_201066496.1    Uniprot ID   -
Organism   Bacillus mycoides strain PAMC 29434     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1258641..1268964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY74_RS06435 (RVY74_06435) - 1258822..1260108 (+) 1287 WP_201066488.1 D-alanyl-D-alanine carboxypeptidase family protein -
  RVY74_RS06440 (RVY74_06440) sipW 1260306..1260875 (+) 570 WP_201066490.1 signal peptidase I SipW -
  RVY74_RS06445 (RVY74_06445) - 1260940..1261527 (+) 588 WP_201066492.1 CalY family protein -
  RVY74_RS06450 (RVY74_06450) - 1261689..1262522 (+) 834 WP_201066494.1 DUF4047 domain-containing protein -
  RVY74_RS06455 (RVY74_06455) calY 1262966..1263559 (+) 594 WP_002011472.1 biofilm matrix protein CalY -
  RVY74_RS06460 (RVY74_06460) sinR 1263641..1263964 (-) 324 WP_201066496.1 helix-turn-helix domain-containing protein Regulator
  RVY74_RS06465 (RVY74_06465) - 1264044..1264178 (-) 135 WP_002011474.1 anti-repressor SinI family protein -
  RVY74_RS06470 (RVY74_06470) inhA1 1264520..1266907 (+) 2388 WP_002011475.1 M6 family metalloprotease immune inhibitor InhA1 -
  RVY74_RS06475 (RVY74_06475) - 1267061..1268446 (+) 1386 WP_201066498.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12336.06 Da        Isoelectric Point: 7.2050

>NTDB_id=890395 RVY74_RS06460 WP_201066496.1 1263641..1263964(-) (sinR) [Bacillus mycoides strain PAMC 29434]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKISSVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=890395 RVY74_RS06460 WP_201066496.1 1263641..1263964(-) (sinR) [Bacillus mycoides strain PAMC 29434]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAGGGCATTTCACTAACAGAACTCGCCGAAAAAGCTGGTGTAGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTCGAAAAAATTTCATCTGTTC
TACAAATTCCAGTTGATACGTTACTTCACGATGAAACAACAACAGAAAGTCATCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682