Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   RUI02_RS12355 Genome accession   NZ_CP136099
Coordinates   2402728..2403024 (-) Length   98 a.a.
NCBI ID   WP_014477332.1    Uniprot ID   -
Organism   Bacillus sp. TSA-4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2397728..2408024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUI02_RS12310 (RUI02_12310) tasA 2398135..2398920 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  RUI02_RS12315 (RUI02_12315) sipW 2398984..2399556 (-) 573 WP_003230181.1 signal peptidase I SipW -
  RUI02_RS12320 (RUI02_12320) tapA 2399540..2400301 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  RUI02_RS12325 (RUI02_12325) - 2400573..2400899 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  RUI02_RS12330 (RUI02_12330) - 2400941..2401120 (-) 180 WP_029726723.1 YqzE family protein -
  RUI02_RS12335 (RUI02_12335) comGG 2401192..2401566 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  RUI02_RS12340 (RUI02_12340) comGF 2401567..2401950 (-) 384 WP_046160582.1 ComG operon protein ComGF Machinery gene
  RUI02_RS12345 (RUI02_12345) comGE 2401976..2402323 (-) 348 WP_046381178.1 ComG operon protein 5 Machinery gene
  RUI02_RS12350 (RUI02_12350) comGD 2402307..2402738 (-) 432 WP_046381179.1 comG operon protein ComGD Machinery gene
  RUI02_RS12355 (RUI02_12355) comGC 2402728..2403024 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  RUI02_RS12360 (RUI02_12360) comGB 2403038..2404075 (-) 1038 WP_029317912.1 comG operon protein ComGB Machinery gene
  RUI02_RS12365 (RUI02_12365) comGA 2404062..2405132 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  RUI02_RS12370 (RUI02_12370) - 2405344..2405541 (-) 198 WP_014480259.1 CBS domain-containing protein -
  RUI02_RS12375 (RUI02_12375) corA 2405543..2406496 (-) 954 WP_004399136.1 magnesium transporter CorA -
  RUI02_RS12380 (RUI02_12380) - 2406639..2407967 (+) 1329 WP_003230150.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10830.69 Da        Isoelectric Point: 6.4730

>NTDB_id=888418 RUI02_RS12355 WP_014477332.1 2402728..2403024(-) (comGC) [Bacillus sp. TSA-4]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKHIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=888418 RUI02_RS12355 WP_014477332.1 2402728..2403024(-) (comGC) [Bacillus sp. TSA-4]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATCTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCCTACAAAACATGGTTAAGGCACAAATGACTG
CCTTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCACATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

98.98

100

0.99
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378