Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RS891_RS31490 Genome accession   NZ_CP135922
Coordinates   7056533..7057018 (-) Length   161 a.a.
NCBI ID   WP_024629535.1    Uniprot ID   A0A7Y6BSP4
Organism   Paenibacillus sp. BIC5C1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7051533..7062018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS891_RS31465 opp4B 7051753..7052715 (-) 963 WP_099857737.1 oligopeptide ABC transporter permease -
  RS891_RS31470 - 7052723..7053655 (-) 933 WP_113053310.1 ABC transporter ATP-binding protein -
  RS891_RS31475 - 7053660..7054658 (-) 999 WP_113053368.1 ABC transporter ATP-binding protein -
  RS891_RS31480 - 7055391..7055984 (-) 594 WP_315794123.1 M15 family metallopeptidase -
  RS891_RS31485 rpsR 7056205..7056477 (-) 273 WP_062327715.1 30S ribosomal protein S18 -
  RS891_RS31490 ssbA 7056533..7057018 (-) 486 WP_024629535.1 single-stranded DNA-binding protein Machinery gene
  RS891_RS31495 rpsF 7057067..7057360 (-) 294 WP_024629534.1 30S ribosomal protein S6 -
  RS891_RS31500 - 7057562..7057756 (+) 195 WP_024629533.1 YjzC family protein -
  RS891_RS31510 - 7058379..7058588 (-) 210 WP_113053313.1 DUF951 domain-containing protein -
  RS891_RS31515 - 7058578..7059516 (-) 939 WP_315794124.1 mechanosensitive ion channel family protein -
  RS891_RS31520 - 7059531..7059794 (-) 264 WP_181586567.1 DUF3343 domain-containing protein -
  RS891_RS31525 yyaC 7059911..7060516 (+) 606 WP_099857731.1 spore protease YyaC -
  RS891_RS31530 - 7060491..7060991 (-) 501 WP_315794125.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17861.67 Da        Isoelectric Point: 4.8369

>NTDB_id=887730 RS891_RS31490 WP_024629535.1 7056533..7057018(-) (ssbA) [Paenibacillus sp. BIC5C1]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESANRDNNGGGGGQPMREEPSYGGGGRANNNNNSRSNNQDPFSDDGKPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=887730 RS891_RS31490 WP_024629535.1 7056533..7057018(-) (ssbA) [Paenibacillus sp. BIC5C1]
TTGTTGAACCGTGTCATTCTGATCGGCCGGTTAACCCGGGATCCTGAGTTGCGTTATACTCCAGCTGGAGTAGCAGTTAC
GCAATTTACTTTGGCAGTGGACAGACCGTTTACAAGCCAAGGGGGAGAACGGGAAGCGGATTTCATTCCGGTCGTAACCT
GGAGACAGCTTGCTGAGACTTGTGCAAACTATTTGCGCAAAGGACGCCTAGCTGCAGTCGAAGGACGCATTCAAGTACGG
AATTACGAGAATAACGAAGGAAAACGTGTATACGTGACCGAAGTCATTGCCGATAACGTCCGTTTCTTGGAGTCAGCTAA
CCGTGATAATAACGGTGGCGGCGGTGGGCAACCAATGCGTGAAGAGCCTTCTTACGGAGGCGGCGGGCGCGCGAACAATA
ACAATAATTCGCGTAGCAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATTGATATATCGGATGATGATTTGCCA
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y6BSP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

49.711

100

0.534
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.963

67.702

0.379
  ssb Neisseria meningitidis MC58

33.333

100

0.373
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.153

73.292

0.36
  ssb Neisseria gonorrhoeae MS11

32.584

100

0.36