Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   RS893_RS06445 Genome accession   NZ_CP135918
Coordinates   1546376..1546741 (-) Length   121 a.a.
NCBI ID   WP_315790395.1    Uniprot ID   -
Organism   Fischerella sp. JS2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1541376..1551741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS893_RS06435 - 1542909..1545815 (-) 2907 WP_315790393.1 methyl-accepting chemotaxis protein -
  RS893_RS06440 - 1545832..1546362 (-) 531 WP_315790394.1 chemotaxis protein CheW -
  RS893_RS06445 pilH 1546376..1546741 (-) 366 WP_315790395.1 response regulator Machinery gene
  RS893_RS06450 - 1546907..1548121 (-) 1215 WP_315790396.1 response regulator -
  RS893_RS06455 hmpF 1548535..1550289 (+) 1755 WP_315790397.1 pilus motility taxis protein HmpF -
  RS893_RS06460 tilS 1550592..1551644 (-) 1053 WP_315790398.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13354.43 Da        Isoelectric Point: 4.6811

>NTDB_id=887641 RS893_RS06445 WP_315790395.1 1546376..1546741(-) (pilH) [Fischerella sp. JS2]
MSTVLIVEDSIAQREMITDLLKASGLTVTHASDGVEALEAIQTDPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=887641 RS893_RS06445 WP_315790395.1 1546376..1546741(-) (pilH) [Fischerella sp. JS2]
ATGAGTACAGTTCTGATCGTGGAAGACAGTATCGCCCAAAGGGAGATGATTACAGACCTCCTGAAAGCGAGTGGCTTAAC
AGTAACCCATGCCAGTGATGGAGTAGAAGCGTTGGAAGCAATTCAAACAGATCCTCCTGATTTAGTGGTATTAGATATTG
TCATGCCCCGAATGAATGGCTACGAAGTTTGCCGCCGATTAAAGTCTGACCCCAAAACCCAAAATGTCCCTGTAGTTATG
TGTTCTTCCAAAGGAGAAGAATTTGATCGTTATTGGGGAATGAAACAAGGTGCAGACGCCTACATAGCCAAACCATTCCA
ACCGACTGAGTTGGTGGGAACAGTCAAACAACTACTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

77.686

100

0.777
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364