Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   RRU92_RS00375 Genome accession   NZ_CP135436
Coordinates   86826..88322 (-) Length   498 a.a.
NCBI ID   WP_000761009.1    Uniprot ID   I2JAV0
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 81826..93322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS00355 (RRU92_00355) - 82505..83488 (-) 984 WP_049509043.1 acetylxylan esterase -
  RRU92_RS00360 (RRU92_00360) amiF 83887..84813 (-) 927 WP_001291283.1 ATP-binding cassette domain-containing protein Regulator
  RRU92_RS00365 (RRU92_00365) amiE 84824..85891 (-) 1068 WP_315639858.1 ABC transporter ATP-binding protein Regulator
  RRU92_RS00370 (RRU92_00370) amiD 85900..86826 (-) 927 WP_000104373.1 oligopeptide ABC transporter permease OppC Regulator
  RRU92_RS00375 (RRU92_00375) amiC 86826..88322 (-) 1497 WP_000761009.1 ABC transporter permease Regulator
  RRU92_RS00380 (RRU92_00380) amiA3 88388..90388 (-) 2001 WP_315639859.1 peptide ABC transporter substrate-binding protein Regulator
  RRU92_RS00390 (RRU92_00390) - 91122..91301 (+) 180 WP_315639860.1 hypothetical protein -
  RRU92_RS00395 (RRU92_00395) - 91524..91904 (-) 381 WP_315640889.1 hypothetical protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55771.16 Da        Isoelectric Point: 9.1161

>NTDB_id=886500 RRU92_RS00375 WP_000761009.1 86826..88322(-) (amiC) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MKKYVFMRILRSLVSIFLVTTLIYTIIYTMVPRKLIFKQDTNYNKIATTADKRDNYENTVFERMGYIEYYDTKELQEKAS
SIDSSVTVDANDTNKAIYEKYIQQLGNGWTLGEFTESGQFYATREIPIFERVFKFYANLLDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNLNLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
NIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMIASSAITGLIGLAISYAIAVPLGSAMARFKNTWIDSLSTGT
LTFLMALPTIALVYIIRLIGSSIGFPDSFPILGAGDWRSYVLPSVILGLLGAPGLAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGSIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNNMVVGLVFIFTCVSIFSYLIGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=886500 RRU92_RS00375 WP_000761009.1 86826..88322(-) (amiC) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGAAAAAATATGTTTTTATGCGTATCTTGCGGTCGTTGGTTTCTATTTTCTTAGTAACGACCTTGATTTACACAATCAT
CTATACGATGGTTCCACGGAAGTTGATCTTCAAACAAGATACTAACTACAATAAAATTGCAACCACAGCTGATAAACGTG
ATAACTATGAAAATACCGTCTTTGAGCGTATGGGTTATATCGAATATTACGATACGAAAGAGTTGCAGGAAAAAGCTAGT
AGCATTGACTCTTCTGTTACAGTAGATGCAAATGATACAAATAAAGCAATCTATGAAAAATATATCCAACAACTTGGGAA
TGGTTGGACTCTAGGTGAGTTTACAGAGAGTGGACAATTCTATGCTACACGTGAAATTCCTATTTTTGAGCGTGTGTTCA
AATTCTATGCAAACTTGCTTGATATTGACCATACAAACAAGATCCAAGACCCTGAGAATCCTAACTTAGAGCGTTATTTG
CGCTTTGAGAATGACCCTGCTATCGGTTGGTCTCTTGTGGGTTCTGGTACTAAACACAAATACCTCTTGTACTTCAATAG
TCAGTTTCCATTTGTTCACCAAAACTTTGTCAACTTGAACCTAGGAGATTCTTATCCAACTTATGCAAATACTCCTGTTC
TTCAAGTTATTACACAAGGACAAGGACAAACGAAGACTTCTGAAGTTCAATTCCCAACTGGTAAGAAAACATCATCAGTT
AATATTTACTCAAGAACTTATAAATCTCCGAGTCAAGCTGATGCTCGTGAAGTAGCCAACTACGGTAAAGATGATCCATA
TACAGCTACTGAGAGCAACTATCAATACCCATCAATGATTGCAAGTTCTGCTATCACTGGTTTGATTGGTCTTGCGATTT
CATATGCGATTGCAGTTCCTCTTGGTTCAGCAATGGCTCGTTTCAAGAATACTTGGATTGACAGCCTATCTACAGGTACT
TTGACCTTCTTGATGGCCCTCCCAACGATTGCTCTAGTTTATATCATTCGTTTGATTGGTTCTTCTATCGGATTCCCAGA
CTCATTCCCAATCTTGGGTGCTGGCGATTGGCGATCTTATGTCCTTCCATCAGTCATTCTTGGTTTACTTGGAGCACCTG
GTCTAGCTATCTGGATTCGTCGTTACATGATTGACTTACAATCTCAAGACTTTGTCCGTTTTGCTCGAGCTAAAGGTCTT
TCTGAAAAAGAAATTTCTAACAAACACATCTTTAAAAACGCTATGGTACCACTCGTTTCTGGTATCCCAGGCTCAATTAT
TGGTGTTATTGGTGGAGCAACTCTTACTGAAACAGTCTTTGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCAAACAACAATATGGTAGTTGGTCTGGTCTTCATCTTTACATGTGTTTCAATTTTCTCTTACTTGATTGGAGAT
ATTTGGATGACTATTATTGACCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2JAV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.309

100

0.773
  amiC Streptococcus thermophilus LMG 18311

77.108

100

0.771
  amiC Streptococcus thermophilus LMD-9

76.707

100

0.767