Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   RRU92_RS00360 Genome accession   NZ_CP135436
Coordinates   83887..84813 (-) Length   308 a.a.
NCBI ID   WP_001291283.1    Uniprot ID   I2JAS6
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 78887..89813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS00355 (RRU92_00355) - 82505..83488 (-) 984 WP_049509043.1 acetylxylan esterase -
  RRU92_RS00360 (RRU92_00360) amiF 83887..84813 (-) 927 WP_001291283.1 ATP-binding cassette domain-containing protein Regulator
  RRU92_RS00365 (RRU92_00365) amiE 84824..85891 (-) 1068 WP_315639858.1 ABC transporter ATP-binding protein Regulator
  RRU92_RS00370 (RRU92_00370) amiD 85900..86826 (-) 927 WP_000104373.1 oligopeptide ABC transporter permease OppC Regulator
  RRU92_RS00375 (RRU92_00375) amiC 86826..88322 (-) 1497 WP_000761009.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34966.07 Da        Isoelectric Point: 6.5123

>NTDB_id=886497 RRU92_RS00360 WP_001291283.1 83887..84813(-) (amiF) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSKGDIIFEGQKINGKKSRE
QASELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAELERYKKDLK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=886497 RRU92_RS00360 WP_001291283.1 83887..84813(-) (amiF) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGTCTGAAAAATTAGTAGAAATTAAAGACTTAGAAATTTCCTTCGGTGAAGGAAGCAAAAAGTTTGTCGCTGTTAAAAA
TGCGAACTTCTTTATCAACAAAGGAGAAACTTTCTCACTTGTTGGAGAGTCTGGTAGTGGTAAGACAACAATTGGTCGTG
CTATCATCGGTCTTAATGATACCAGCAAAGGTGATATCATCTTTGAAGGTCAAAAAATTAATGGTAAAAAATCACGTGAA
CAAGCTTCGGAATTAATTCGTCGTATCCAAATGATTTTCCAGGACCCTGCTGCAAGTTTGAATGAACGTGCAACGGTTGA
CTATATCATTTCTGAAGGTCTTTATAACCACCATTTATTTAAAGATGAAGAAGAAAGAAAAGAAAAAGTTCAAAATATCA
TTCGTGAAGTGGGACTTTTGGCTGAACACTTGACACGTTACCCACATGAGTTTTCAGGTGGACAACGTCAACGTATCGGG
ATTGCCCGTGCCTTGGTTATGCAACCTGACTTCGTTATTGCGGATGAGCCTATCTCAGCCTTGGACGTTTCTGTACGTGC
TCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAGGAATTAGGCTTGACTTATCTCTTTATCGCCCACGATTTGTCAGTAG
TTCGTTTCATTTCTGATCGTATCGCGGTAATTTATAAGGGTGTTATTGTTGAAGTGGCTGAAACTGAAGAATTGTTTAAC
AATCCAGTTCATCCATACACGCAAGCACTTCTATCAGCTGTTCCGATTCCAGACCCAATCTTGGAACGTAAAAAAGTTTT
GAAAGTCTATGATCCAGATCAACATGACTATGAAACTGATAAGCCTTCTATGGTAGAAATTCGTCCAGGTCACTATGTTT
GGGCAAACCAAGCTGAGTTGGAACGCTATAAAAAAGATTTGAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2JAS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

84.967

99.351

0.844
  amiF Streptococcus salivarius strain HSISS4

84.967

99.351

0.844
  amiF Streptococcus thermophilus LMD-9

84.641

99.351

0.841