Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   RRU92_RS00370 Genome accession   NZ_CP135436
Coordinates   85900..86826 (-) Length   308 a.a.
NCBI ID   WP_000104373.1    Uniprot ID   -
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 80900..91826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS00355 (RRU92_00355) - 82505..83488 (-) 984 WP_049509043.1 acetylxylan esterase -
  RRU92_RS00360 (RRU92_00360) amiF 83887..84813 (-) 927 WP_001291283.1 ATP-binding cassette domain-containing protein Regulator
  RRU92_RS00365 (RRU92_00365) amiE 84824..85891 (-) 1068 WP_315639858.1 ABC transporter ATP-binding protein Regulator
  RRU92_RS00370 (RRU92_00370) amiD 85900..86826 (-) 927 WP_000104373.1 oligopeptide ABC transporter permease OppC Regulator
  RRU92_RS00375 (RRU92_00375) amiC 86826..88322 (-) 1497 WP_000761009.1 ABC transporter permease Regulator
  RRU92_RS00380 (RRU92_00380) amiA3 88388..90388 (-) 2001 WP_315639859.1 peptide ABC transporter substrate-binding protein Regulator
  RRU92_RS00390 (RRU92_00390) - 91122..91301 (+) 180 WP_315639860.1 hypothetical protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34593.45 Da        Isoelectric Point: 9.3082

>NTDB_id=886499 RRU92_RS00370 WP_000104373.1 85900..86826(-) (amiD) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MSTISNDKFQFVKRDDFASEAIDAPAYSYWGSVFRQFLKKKSTIIMLGILISIVLMSFIYPMFSDFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINVVIGVIVGGIWGISKSVDRIMMEVYNVINNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASRTLGTPTHKIVIKNIMPQLVSVIVTTTSQMLPAFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=886499 RRU92_RS00370 WP_000104373.1 85900..86826(-) (amiD) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGTCTACGATTAGTAATGATAAATTTCAATTTGTAAAACGAGATGATTTTGCCTCTGAAGCAATTGATGCTCCTGCCTA
CTCATATTGGGGTTCTGTCTTTAGACAGTTTTTGAAGAAAAAATCAACAATCATCATGCTTGGTATTTTGATTTCCATCG
TATTGATGAGTTTCATCTATCCAATGTTTTCTGATTTTGACTTCAATGATGTAAGTAAGGTAAATGATTTTAGCGCTCGT
TACATTAAGCCAAATGCTGAACATTGGTTTGGTACAGATAGTAATGGTAAATCTCTCTTTGACGGTGTCTGGTTTGGAGC
ACGTAACTCTATCTTGATTTCCGTAATTGCGACCTTTATAAACGTTGTTATCGGTGTTATTGTCGGCGGAATCTGGGGTA
TTTCAAAATCAGTTGACCGTATCATGATGGAAGTTTATAACGTTATCAATAACATCCCTTCACTTTTGATCGTTATTGTT
TTGACTTACTCTATCGGTGCAGGTTTCTGGAACTTGATTTTTGCCATGAGTGTAACTACTTGGATTGGTATTGCTTATAT
GATTCGTATCCAAATCATGCGTTACCGTGATTTGGAGTACAACCTTGCTTCACGTACACTGGGAACACCAACCCATAAGA
TTGTTATTAAAAATATCATGCCTCAATTGGTTTCTGTTATTGTTACAACTACATCACAAATGCTTCCTGCATTTATCTCA
TATGAAGCCTTCCTGTCATTCTTTGGACTCGGCTTGCCAATCACAGTACCAAGTTTGGGACGTTTGATTTCGGATTATTC
TCAGAACGTAACAACCAATGCTTACCTCTTCTGGATTCCATTGACAACTTTGGTCTTGGTATCCTTGTCACTGTTCGTAG
TTGGTCAGAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(122-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.117

100

0.831
  amiD Streptococcus thermophilus LMG 18311

82.143

100

0.821
  amiD Streptococcus thermophilus LMD-9

82.143

100

0.821