Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RRU92_RS00380 Genome accession   NZ_CP135436
Coordinates   88388..90388 (-) Length   666 a.a.
NCBI ID   WP_315639859.1    Uniprot ID   A0AA96S3F5
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 83388..95388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS00360 (RRU92_00360) amiF 83887..84813 (-) 927 WP_001291283.1 ATP-binding cassette domain-containing protein Regulator
  RRU92_RS00365 (RRU92_00365) amiE 84824..85891 (-) 1068 WP_315639858.1 ABC transporter ATP-binding protein Regulator
  RRU92_RS00370 (RRU92_00370) amiD 85900..86826 (-) 927 WP_000104373.1 oligopeptide ABC transporter permease OppC Regulator
  RRU92_RS00375 (RRU92_00375) amiC 86826..88322 (-) 1497 WP_000761009.1 ABC transporter permease Regulator
  RRU92_RS00380 (RRU92_00380) amiA3 88388..90388 (-) 2001 WP_315639859.1 peptide ABC transporter substrate-binding protein Regulator
  RRU92_RS00390 (RRU92_00390) - 91122..91301 (+) 180 WP_315639860.1 hypothetical protein -
  RRU92_RS00395 (RRU92_00395) - 91524..91904 (-) 381 WP_315640889.1 hypothetical protein -
  RRU92_RS00400 (RRU92_00400) - 92125..93456 (-) 1332 WP_315639863.1 hemolysin family protein -
  RRU92_RS00405 (RRU92_00405) endA 93709..94539 (-) 831 WP_153225124.1 DNA/RNA non-specific endonuclease Machinery gene
  RRU92_RS00410 (RRU92_00410) - 94737..94931 (-) 195 WP_315639866.1 DNA-directed RNA polymerase subunit beta -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 73017.34 Da        Isoelectric Point: 4.9958

>NTDB_id=886501 RRU92_RS00380 WP_315639859.1 88388..90388(-) (amiA3) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MKKSRILAVAGVSLLAAGVLAACSNTNSNAGSSNAKLASDYKYVYSVDPETLDYVVNNVDSTSFVTTNAVDGLLANDKYG
NLVPSIAESWTVSQDGLTYTYKIRKDAKWVTAEGEEYAPVKAQDFVTGLKHAVEGKSKGLSVISSSIKGLSAYINGETND
FSTVGVKAVDDNTLEYTLNQPETFWNDKTTNGVMMPINEDFLKSKGEGFGAPTDPSSILYNGPFVLKAITAKSSIEMAKN
DAYWDKDAVKIQNIKFTYWDGKDQDVVAKGFSEGQYSKARIYPTSSTYEKYASEFKDNIYFSEPGSAIATVSVNYGRSTY
NHTSKTTDSQKESTRKALLNKEFRQALNFAVDRNSYSAQTNGTEGAAVAIRNTFTPYNLPVGDKQFGELVEESLSKTNSG
TWSNISLADSQNGLYNEEKAKAAFAKAKESLKAEGVEFPIHLDALTIQESTAVVNRVQSLKQSIENVLGSDNVVIDLQQM
TQAEALPLSFSAPTAKEQDWDIHTLTGWNPDYQDPSTFLDQYTIKGGNTRLLMGIDKDTDASVIQKLGLSDYEKLVDEAN
KENQDVQKRYEKYALAQAWLTDNGLTIPVMAGPKETAVSFVSKVIPFTSSYSAAGLKGETSGYLKYTEVGEKPITKEEYQ
KAREKWLKEKAASNEKAQKELASHVK

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=886501 RRU92_RS00380 WP_315639859.1 88388..90388(-) (amiA3) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGAAAAAAAGTCGGATTCTTGCAGTAGCGGGGGTGTCCTTGCTTGCGGCAGGAGTGCTTGCTGCATGTTCAAACACGAA
TTCAAATGCAGGTTCAAGCAATGCAAAATTAGCATCAGATTATAAATACGTTTATTCAGTTGATCCAGAAACATTGGATT
ATGTTGTTAACAACGTTGATTCTACTTCTTTTGTAACTACAAATGCAGTAGATGGTTTGCTTGCTAATGATAAATATGGC
AACCTCGTACCATCGATTGCTGAATCATGGACAGTTTCACAAGATGGTTTGACTTACACTTATAAAATCCGTAAGGATGC
TAAGTGGGTTACTGCTGAAGGAGAAGAATACGCTCCAGTTAAAGCCCAAGACTTTGTGACAGGGTTGAAACACGCGGTAG
AAGGAAAATCAAAAGGGCTGTCTGTTATTAGTTCTTCAATTAAAGGACTCAGCGCTTACATTAACGGTGAAACAAACGAC
TTTTCAACTGTTGGAGTAAAAGCAGTTGATGATAACACTCTGGAATATACCTTGAATCAGCCAGAGACTTTCTGGAATGA
TAAAACAACAAATGGCGTGATGATGCCAATCAATGAAGATTTCCTTAAATCTAAAGGGGAAGGCTTTGGTGCACCTACAG
ATCCATCTTCTATTTTGTATAATGGACCATTTGTTTTGAAAGCAATCACAGCTAAGTCTTCAATCGAAATGGCTAAGAAT
GATGCCTATTGGGATAAAGATGCAGTTAAAATTCAAAACATTAAATTTACATACTGGGATGGGAAAGACCAAGATGTTGT
TGCTAAAGGATTCTCAGAAGGACAATACAGTAAAGCTCGTATTTATCCTACTAGCTCAACATACGAAAAATATGCGTCTG
AGTTCAAAGACAACATCTACTTTAGCGAACCAGGATCAGCCATCGCTACTGTCAGTGTGAACTATGGTCGTTCAACTTAT
AACCACACTTCAAAAACAACAGATAGCCAAAAAGAATCTACAAGAAAAGCCTTGCTAAATAAAGAATTCCGTCAAGCCCT
AAACTTTGCGGTAGATCGTAATTCTTACTCAGCACAGACAAATGGCACAGAAGGAGCTGCAGTTGCAATCCGTAATACTT
TCACACCATATAATCTTCCAGTTGGTGACAAACAATTTGGTGAACTTGTAGAAGAAAGTCTTTCGAAGACAAACTCAGGC
ACATGGTCAAACATTTCACTTGCTGATTCGCAAAATGGTCTCTACAATGAAGAAAAAGCTAAAGCAGCCTTTGCAAAAGC
AAAAGAAAGCTTGAAAGCTGAAGGGGTAGAATTCCCAATCCACTTGGATGCTCTAACAATCCAAGAATCTACAGCTGTTG
TAAACCGTGTTCAATCACTTAAACAATCTATTGAAAACGTACTTGGATCAGACAATGTTGTAATCGATCTTCAACAAATG
ACTCAAGCAGAAGCATTACCACTTTCATTCAGTGCTCCAACAGCAAAAGAACAAGACTGGGATATTCATACTTTGACTGG
ATGGAATCCAGATTATCAGGATCCATCAACTTTCTTAGACCAGTACACGATTAAAGGCGGAAATACTCGCTTGCTTATGG
GTATTGACAAAGATACTGACGCATCAGTTATCCAAAAACTTGGTTTGTCTGACTATGAAAAATTAGTTGATGAAGCAAAT
AAAGAAAATCAAGATGTTCAAAAACGCTACGAAAAATATGCCCTTGCTCAAGCTTGGTTAACAGACAACGGTTTGACAAT
TCCTGTGATGGCAGGTCCAAAAGAAACCGCTGTATCATTTGTATCTAAAGTTATTCCATTTACTTCTTCTTACTCAGCTG
CGGGTCTTAAAGGAGAAACCTCAGGTTACTTGAAGTACACTGAGGTTGGTGAAAAACCTATTACAAAAGAAGAATACCAA
AAAGCTCGTGAAAAATGGCTCAAAGAAAAAGCTGCATCAAACGAAAAAGCTCAAAAAGAATTAGCGAGTCATGTGAAATA
A

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(82-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.743

100

0.539
  amiA Streptococcus salivarius strain HSISS4

53.593

100

0.538
  amiA3 Streptococcus thermophilus LMG 18311

53.443

100

0.536