Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RRU92_RS00365 Genome accession   NZ_CP135436
Coordinates   84824..85891 (-) Length   355 a.a.
NCBI ID   WP_315639858.1    Uniprot ID   A0AA96S3Y4
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 79824..90891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS00355 (RRU92_00355) - 82505..83488 (-) 984 WP_049509043.1 acetylxylan esterase -
  RRU92_RS00360 (RRU92_00360) amiF 83887..84813 (-) 927 WP_001291283.1 ATP-binding cassette domain-containing protein Regulator
  RRU92_RS00365 (RRU92_00365) amiE 84824..85891 (-) 1068 WP_315639858.1 ABC transporter ATP-binding protein Regulator
  RRU92_RS00370 (RRU92_00370) amiD 85900..86826 (-) 927 WP_000104373.1 oligopeptide ABC transporter permease OppC Regulator
  RRU92_RS00375 (RRU92_00375) amiC 86826..88322 (-) 1497 WP_000761009.1 ABC transporter permease Regulator
  RRU92_RS00380 (RRU92_00380) amiA3 88388..90388 (-) 2001 WP_315639859.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39506.21 Da        Isoelectric Point: 4.8800

>NTDB_id=886498 RRU92_RS00365 WP_315639858.1 84824..85891(-) (amiE) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MIKGKNVILTAQDIVVEFDVRDKILTAIRGVSIDLIEGEVLALVGESGSGKSVLTKTFTGMLEGNGRIARGSINYRGQEL
TSLTSNKDWESIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAQEAKELAIDYMNKVGIPDSEKRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQHEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEIFYDPRHPYTWSLLSSLPQLADDKGELYSIPGTPPSLYTELKGDAFALRSDYAMKIDFEEKAPQFAVSDTHWAK
TWLLHEQAPKVEKPAVIADLHDKIREKMGFTHLED

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=886498 RRU92_RS00365 WP_315639858.1 84824..85891(-) (amiE) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGATAAAAGGAAAAAATGTAATTTTGACTGCTCAAGATATTGTCGTGGAATTTGATGTTCGTGACAAGATTTTGACAGC
TATTCGAGGTGTCTCCATCGATCTGATCGAGGGAGAGGTTCTCGCTTTAGTTGGAGAGTCAGGTTCAGGTAAATCAGTTT
TGACAAAAACATTCACAGGAATGTTGGAAGGAAATGGTCGTATTGCACGAGGTAGTATTAATTACCGTGGCCAAGAATTG
ACCAGCCTTACATCTAATAAAGATTGGGAAAGTATTCGTGGTGCCAAGATTGCAACTATCTTCCAAGATCCAATGACCAG
TCTAGACCCAATCAAGACAATCGGAAGTCAAATCACAGAAGTTATTGTTAAACACCAAGGCAAGACTGCGCAAGAAGCTA
AAGAATTGGCTATCGACTATATGAATAAAGTTGGTATTCCAGATTCTGAGAAACGTTTTGACGAGTATCCTTTCCAATAT
TCTGGGGGAATGCGTCAACGTATCGTTATCGCGATTGCTCTTGCCTGTCGTCCAGACATTCTTATCTGTGATGAGCCGAC
AACAGCTCTTGACGTGACCATTCAGGCACAGATTATTGATTTGTTGAAGTCACTTCAACACGAATACCACTTTACAACAA
TCTTTATCACCCACGACCTAGGTGTCGTAGCAAGTATCGCTGATAAAGTAGCGGTTATGTATGCTGGTGAGATTGTCGAG
TATGGTACTGTTGAAGAAATCTTCTACGACCCACGTCATCCATATACATGGAGCCTCTTGTCAAGCTTGCCTCAACTTGC
GGATGACAAAGGTGAATTATACTCAATCCCTGGAACACCTCCATCGCTTTATACTGAATTGAAGGGAGATGCTTTTGCTC
TTCGTTCAGATTATGCTATGAAGATTGACTTCGAGGAAAAAGCACCTCAGTTTGCAGTATCTGATACTCATTGGGCTAAG
ACATGGTTGCTTCATGAACAAGCTCCAAAAGTTGAAAAACCAGCGGTGATTGCAGATTTACACGACAAGATTCGTGAAAA
GATGGGCTTTACACATCTTGAGGACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

85.352

100

0.854
  amiE Streptococcus thermophilus LMG 18311

83.38

100

0.834
  amiE Streptococcus thermophilus LMD-9

83.38

100

0.834
  oppD Streptococcus mutans UA159

54.023

98.028

0.53