Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RJD11_RS13625 Genome accession   NZ_CP135184
Coordinates   2708982..2709317 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain NDB     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2703982..2714317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD11_RS13605 (RJD11_13605) gcvT 2704588..2705688 (-) 1101 WP_025284994.1 glycine cleavage system aminomethyltransferase GcvT -
  RJD11_RS13610 (RJD11_13610) - 2706112..2707782 (+) 1671 WP_132105375.1 DEAD/DEAH box helicase -
  RJD11_RS13615 (RJD11_13615) - 2707804..2708598 (+) 795 WP_208480294.1 YqhG family protein -
  RJD11_RS13620 (RJD11_13620) sinI 2708775..2708948 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  RJD11_RS13625 (RJD11_13625) sinR 2708982..2709317 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  RJD11_RS13630 (RJD11_13630) tasA 2709365..2710150 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  RJD11_RS13635 (RJD11_13635) sipW 2710215..2710799 (-) 585 WP_015240205.1 signal peptidase I SipW -
  RJD11_RS13640 (RJD11_13640) tapA 2710771..2711442 (-) 672 WP_124692843.1 amyloid fiber anchoring/assembly protein TapA -
  RJD11_RS13645 (RJD11_13645) - 2711701..2712030 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  RJD11_RS13650 (RJD11_13650) - 2712070..2712249 (-) 180 WP_003153093.1 YqzE family protein -
  RJD11_RS13655 (RJD11_13655) comGG 2712306..2712683 (-) 378 WP_015240208.1 competence type IV pilus minor pilin ComGG Machinery gene
  RJD11_RS13660 (RJD11_13660) comGF 2712684..2713184 (-) 501 WP_256994853.1 competence type IV pilus minor pilin ComGF -
  RJD11_RS13665 (RJD11_13665) comGE 2713093..2713407 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  RJD11_RS13670 (RJD11_13670) comGD 2713391..2713828 (-) 438 WP_015240210.1 competence type IV pilus minor pilin ComGD Machinery gene
  RJD11_RS13675 (RJD11_13675) comGC 2713818..2714126 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=886044 RJD11_RS13625 WP_003153104.1 2708982..2709317(+) (sinR) [Bacillus velezensis strain NDB]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=886044 RJD11_RS13625 WP_003153104.1 2708982..2709317(+) (sinR) [Bacillus velezensis strain NDB]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991