Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   RMQ62_RS05845 Genome accession   NZ_CP135065
Coordinates   1185941..1187137 (-) Length   398 a.a.
NCBI ID   WP_313680545.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180941..1192137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS05820 (RMQ62_05820) - 1181064..1181267 (-) 204 WP_024379529.1 DUF951 domain-containing protein -
  RMQ62_RS05825 (RMQ62_05825) - 1181277..1182158 (-) 882 WP_313680546.1 diacylglycerol kinase family protein -
  RMQ62_RS05830 (RMQ62_05830) dnaN 1182250..1183386 (-) 1137 WP_004194538.1 DNA polymerase III subunit beta -
  RMQ62_RS05835 (RMQ62_05835) dnaA 1183540..1184913 (-) 1374 WP_024376047.1 chromosomal replication initiator protein DnaA -
  RMQ62_RS05840 (RMQ62_05840) spo0J 1185116..1185880 (-) 765 WP_012775418.1 ParB/RepB/Spo0J family partition protein Regulator
  RMQ62_RS05845 (RMQ62_05845) htrA 1185941..1187137 (-) 1197 WP_313680545.1 trypsin-like peptidase domain-containing protein Regulator
  RMQ62_RS05850 (RMQ62_05850) rlmH 1187310..1187789 (+) 480 WP_023371894.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RMQ62_RS05855 (RMQ62_05855) - 1187814..1188497 (+) 684 WP_012775416.1 YoaK family protein -
  RMQ62_RS05875 (RMQ62_05875) - 1188898..1191477 (-) 2580 WP_109372123.1 YfhO family protein -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 41836.80 Da        Isoelectric Point: 4.5940

>NTDB_id=884734 RMQ62_RS05845 WP_313680545.1 1185941..1187137(-) (htrA) [Streptococcus suis strain ID24665]
MERIPYMKKYLKFAILFVIGFFGGLIGALSASFFQPQVQQANSTITSVSNVQYNNETSTTKAVEKVQNAVVSVINYQKSA
NNSLGAIFGNIESSDELAVAGEGSGVIYKKDGQYAYVVTNTHVINNAEKIDILLASGEKISGELVGSDTYSDIAVIKISA
DKVTAVAEFADSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQSKDGQTISTNAIQTDTAINPGNSGGPLIN
TQGQVIGITSSKITSSSANSSGVAVEGLGFAIPANDAVAIINQLEKTGQVSRPALGVHMVNLTTLSTSQLEKAGLSNTEL
TSGVVIVSTQSGLPADGKLETFDVITEIDGETIQNKSDLQSALYKHQIGDTITVTYYRNNQKQTVDIKLTHSTEELSE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=884734 RMQ62_RS05845 WP_313680545.1 1185941..1187137(-) (htrA) [Streptococcus suis strain ID24665]
ATGGAAAGGATTCCTTATATGAAAAAATATTTGAAATTTGCGATTTTATTTGTAATTGGATTTTTTGGGGGTCTTATCGG
AGCCTTATCAGCCTCTTTCTTCCAACCACAGGTTCAACAAGCAAATTCTACTATCACTAGTGTCAGCAATGTTCAATACA
ATAATGAAACTTCCACCACAAAAGCTGTAGAGAAAGTACAAAATGCTGTTGTGTCTGTTATTAATTACCAAAAGTCAGCC
AACAATAGTCTTGGTGCTATCTTTGGAAATATTGAATCATCTGACGAACTAGCTGTTGCTGGAGAGGGGTCTGGGGTTAT
CTATAAAAAAGATGGTCAATATGCCTATGTTGTGACAAATACGCATGTTATTAATAACGCAGAAAAGATTGATATTCTTT
TAGCATCTGGAGAAAAAATCAGCGGTGAACTCGTTGGTTCCGATACCTATTCTGATATAGCTGTTATAAAAATATCAGCA
GATAAAGTCACTGCTGTTGCTGAATTTGCTGATTCCGATACAATTAAAGTTGGAGAAACTGCTATCGCAATTGGTAGTCC
TCTAGGTAGCGTCTACGCTAATACAGTTACTCAAGGTATTATTTCTAGCTTAAGTCGGACAGTTACTTCACAATCAAAAG
ATGGACAAACAATCTCAACTAACGCTATTCAAACTGATACAGCTATCAACCCTGGAAACTCTGGCGGACCGTTAATCAAT
ACCCAAGGACAAGTGATAGGCATTACCTCTAGCAAAATTACCTCAAGTTCTGCAAATAGCTCAGGCGTGGCTGTAGAAGG
GTTGGGATTTGCTATTCCTGCAAATGATGCCGTAGCTATTATCAATCAGCTTGAAAAAACTGGACAAGTTAGCCGACCTG
CTCTTGGAGTTCATATGGTTAACTTGACGACCTTGTCAACTAGTCAATTGGAAAAAGCTGGATTATCAAATACGGAATTA
ACATCCGGTGTCGTAATTGTCTCTACACAAAGTGGACTACCTGCAGATGGAAAATTAGAAACTTTTGATGTCATTACTGA
GATTGACGGAGAAACTATTCAAAATAAGAGTGATCTCCAAAGCGCTCTCTACAAACATCAAATTGGAGACACAATCACTG
TAACTTATTACCGCAATAATCAGAAACAAACTGTTGACATTAAGTTGACACATTCTACAGAAGAACTTAGTGAATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(293-389)

Trypsin-like peptidase domain (Trypsin_2)

(103-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

59.446

99.749

0.593
  htrA Streptococcus gordonii str. Challis substr. CH1

59.494

99.246

0.59
  htrA Streptococcus pneumoniae D39

56.997

98.744

0.563
  htrA Streptococcus pneumoniae TIGR4

56.997

98.744

0.563
  htrA Streptococcus mitis NCTC 12261

56.997

98.744

0.563
  htrA Streptococcus pneumoniae R6

56.997

98.744

0.563
  htrA Streptococcus pneumoniae Rx1

56.997

98.744

0.563