Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RMQ62_RS05840 Genome accession   NZ_CP135065
Coordinates   1185116..1185880 (-) Length   254 a.a.
NCBI ID   WP_012775418.1    Uniprot ID   A0A0Z9LUD5
Organism   Streptococcus suis strain ID24665     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180116..1190880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS05815 (RMQ62_05815) - 1180838..1180960 (-) 123 Protein_1102 helix-turn-helix transcriptional regulator -
  RMQ62_RS05820 (RMQ62_05820) - 1181064..1181267 (-) 204 WP_024379529.1 DUF951 domain-containing protein -
  RMQ62_RS05825 (RMQ62_05825) - 1181277..1182158 (-) 882 WP_313680546.1 diacylglycerol kinase family protein -
  RMQ62_RS05830 (RMQ62_05830) dnaN 1182250..1183386 (-) 1137 WP_004194538.1 DNA polymerase III subunit beta -
  RMQ62_RS05835 (RMQ62_05835) dnaA 1183540..1184913 (-) 1374 WP_024376047.1 chromosomal replication initiator protein DnaA -
  RMQ62_RS05840 (RMQ62_05840) spo0J 1185116..1185880 (-) 765 WP_012775418.1 ParB/RepB/Spo0J family partition protein Regulator
  RMQ62_RS05845 (RMQ62_05845) htrA 1185941..1187137 (-) 1197 WP_313680545.1 trypsin-like peptidase domain-containing protein Regulator
  RMQ62_RS05850 (RMQ62_05850) rlmH 1187310..1187789 (+) 480 WP_023371894.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RMQ62_RS05855 (RMQ62_05855) - 1187814..1188497 (+) 684 WP_012775416.1 YoaK family protein -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28966.25 Da        Isoelectric Point: 9.4760

>NTDB_id=884733 RMQ62_RS05840 WP_012775418.1 1185116..1185880(-) (spo0J) [Streptococcus suis strain ID24665]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRISF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=884733 RMQ62_RS05840 WP_012775418.1 1185116..1185880(-) (spo0J) [Streptococcus suis strain ID24665]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCCATTAAGGAAAATGGATTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAGGAA
CTAACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACGCATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAGCACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z9LUD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.159

99.213

0.547