Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   Q9J89_RS01515 Genome accession   NZ_CP135051
Coordinates   288837..289154 (+) Length   105 a.a.
NCBI ID   WP_002465742.1    Uniprot ID   -
Organism   Staphylococcus warneri strain TWSL_1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 283837..294154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9J89_RS01485 - 284628..284831 (+) 204 WP_002451885.1 YqgQ family protein -
  Q9J89_RS01490 - 284828..285814 (+) 987 WP_002465775.1 ROK family glucokinase -
  Q9J89_RS01495 - 285814..286137 (+) 324 WP_015364969.1 MTH1187 family thiamine-binding protein -
  Q9J89_RS01500 - 286141..286764 (+) 624 WP_002465751.1 MBL fold metallo-hydrolase -
  Q9J89_RS01505 comGA 286811..287785 (+) 975 WP_002465784.1 competence type IV pilus ATPase ComGA Machinery gene
  Q9J89_RS01510 comGB 287757..288824 (+) 1068 WP_107529356.1 competence type IV pilus assembly protein ComGB -
  Q9J89_RS01515 comGC 288837..289154 (+) 318 WP_002465742.1 competence type IV pilus major pilin ComGC Machinery gene
  Q9J89_RS01520 comGD 289132..289572 (+) 441 WP_145541292.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q9J89_RS01525 - 289770..290267 (+) 498 WP_145541288.1 competence type IV pilus minor pilin ComGF -
  Q9J89_RS01530 - 290426..290944 (+) 519 WP_071561236.1 shikimate kinase -
  Q9J89_RS01535 gcvT 291116..292207 (+) 1092 WP_313795184.1 glycine cleavage system aminomethyltransferase GcvT -
  Q9J89_RS01540 gcvPA 292226..293575 (+) 1350 WP_058710165.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11738.79 Da        Isoelectric Point: 9.5430

>NTDB_id=884539 Q9J89_RS01515 WP_002465742.1 288837..289154(+) (comGC) [Staphylococcus warneri strain TWSL_1]
MRKHKYSLKTKAFTLIEMLLVLLIISLLLILIIPNVAKQTAHIQSTGCDAQVKMINSQIEAYTLKHNRNPNTIQDLITEG
YIKENQKSCKTGETISISNGEAIAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=884539 Q9J89_RS01515 WP_002465742.1 288837..289154(+) (comGC) [Staphylococcus warneri strain TWSL_1]
ATGAGAAAACATAAATACTCACTTAAAACTAAAGCTTTCACCTTAATAGAAATGCTTTTAGTATTATTAATCATAAGTTT
ATTACTTATTTTAATTATACCTAATGTCGCCAAACAGACGGCACATATTCAATCAACTGGATGCGATGCACAAGTTAAAA
TGATAAATAGCCAAATTGAAGCGTATACTTTAAAACATAATAGAAATCCAAATACTATTCAGGATTTAATTACAGAAGGA
TATATTAAAGAGAATCAAAAAAGTTGTAAAACAGGTGAAACAATTTCAATAAGTAATGGCGAAGCGATTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

81.188

96.19

0.781
  comGC Staphylococcus aureus N315

81.188

96.19

0.781
  comYC Streptococcus gordonii str. Challis substr. CH1

43.434

94.286

0.41
  comYC Streptococcus suis isolate S10

50

76.19

0.381
  comGC Bacillus subtilis subsp. subtilis str. 168

42.553

89.524

0.381