Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   Q9J89_RS01520 Genome accession   NZ_CP135051
Coordinates   289132..289572 (+) Length   146 a.a.
NCBI ID   WP_145541292.1    Uniprot ID   -
Organism   Staphylococcus warneri strain TWSL_1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 284132..294572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9J89_RS01485 - 284628..284831 (+) 204 WP_002451885.1 YqgQ family protein -
  Q9J89_RS01490 - 284828..285814 (+) 987 WP_002465775.1 ROK family glucokinase -
  Q9J89_RS01495 - 285814..286137 (+) 324 WP_015364969.1 MTH1187 family thiamine-binding protein -
  Q9J89_RS01500 - 286141..286764 (+) 624 WP_002465751.1 MBL fold metallo-hydrolase -
  Q9J89_RS01505 comGA 286811..287785 (+) 975 WP_002465784.1 competence type IV pilus ATPase ComGA Machinery gene
  Q9J89_RS01510 comGB 287757..288824 (+) 1068 WP_107529356.1 competence type IV pilus assembly protein ComGB -
  Q9J89_RS01515 comGC 288837..289154 (+) 318 WP_002465742.1 competence type IV pilus major pilin ComGC Machinery gene
  Q9J89_RS01520 comGD 289132..289572 (+) 441 WP_145541292.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q9J89_RS01525 - 289770..290267 (+) 498 WP_145541288.1 competence type IV pilus minor pilin ComGF -
  Q9J89_RS01530 - 290426..290944 (+) 519 WP_071561236.1 shikimate kinase -
  Q9J89_RS01535 gcvT 291116..292207 (+) 1092 WP_313795184.1 glycine cleavage system aminomethyltransferase GcvT -
  Q9J89_RS01540 gcvPA 292226..293575 (+) 1350 WP_058710165.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16978.28 Da        Isoelectric Point: 10.6204

>NTDB_id=884540 Q9J89_RS01520 WP_145541292.1 289132..289572(+) (comGD) [Staphylococcus warneri strain TWSL_1]
MAKRLQIKAYNYIEMLMVLFILSILLLCTLSSKNLLTISKSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSNIN
VKEENGKKYQIKIKDGKIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL

Nucleotide


Download         Length: 441 bp        

>NTDB_id=884540 Q9J89_RS01520 WP_145541292.1 289132..289572(+) (comGD) [Staphylococcus warneri strain TWSL_1]
ATGGCGAAGCGATTGCAAATTAAAGCGTATAATTACATAGAAATGTTAATGGTATTATTCATTTTGTCTATACTATTGTT
GTGTACTTTAAGCAGTAAAAATCTTTTAACAATATCAAAATCTAATGATGAAATGAATATTAATCTACTAATAACTCAAT
TGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTTTAATGTTTAATCATCAATCTTCTAATATAAAT
GTTAAAGAAGAAAATGGTAAAAAGTATCAAATAAAAATAAAAGATGGGAAGATCATAAAGATAACGAAAATAAATCTAAT
TACCTTTGATAAAAACGGCAATGTTAATCATTTTGGTTCGTTAAATATAAAAATGAAACATTCAATATACAAAGTCATAT
TTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

49.664

100

0.507
  comGD Staphylococcus aureus N315

49.664

100

0.507