Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RL451_RS13635 | Genome accession | NZ_CP134617 |
| Coordinates | 2743709..2744179 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934760.1 | Uniprot ID | A0AAN2D761 |
| Organism | Staphylococcus aureus strain IPLA16 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2726251..2749337 | 2743709..2744179 | within | 0 |
Gene organization within MGE regions
Location: 2726251..2749337
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RL451_RS13505 (RL451_13505) | - | 2726251..2726694 (+) | 444 | WP_000361985.1 | hypothetical protein | - |
| RL451_RS13510 (RL451_13510) | - | 2727417..2728640 (-) | 1224 | WP_000206637.1 | ArgE/DapE family deacylase | - |
| RL451_RS13515 (RL451_13515) | lukH | 2729076..2730128 (+) | 1053 | WP_000791404.1 | bi-component leukocidin LukGH subunit H | - |
| RL451_RS13520 (RL451_13520) | lukG | 2730150..2731166 (+) | 1017 | WP_000595325.1 | bi-component leukocidin LukGH subunit G | - |
| RL451_RS13525 (RL451_13525) | sph | 2731404..2732228 (-) | 825 | Protein_2621 | sphingomyelin phosphodiesterase | - |
| RL451_RS13530 (RL451_13530) | - | 2732285..2733322 (-) | 1038 | WP_000857191.1 | tyrosine-type recombinase/integrase | - |
| RL451_RS13535 (RL451_13535) | - | 2733381..2733845 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| RL451_RS13540 (RL451_13540) | - | 2733945..2734127 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| RL451_RS13545 (RL451_13545) | - | 2734331..2734672 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| RL451_RS13550 (RL451_13550) | - | 2734678..2735610 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| RL451_RS13555 (RL451_13555) | - | 2735626..2736339 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| RL451_RS13560 (RL451_13560) | - | 2736302..2736475 (+) | 174 | WP_031908048.1 | hypothetical protein | - |
| RL451_RS13565 (RL451_13565) | - | 2736472..2736735 (+) | 264 | WP_000854070.1 | helix-turn-helix transcriptional regulator | - |
| RL451_RS13570 (RL451_13570) | - | 2736751..2736965 (+) | 215 | Protein_2630 | Thoeris anti-defense Tad2 family protein | - |
| RL451_RS13575 (RL451_13575) | - | 2736954..2737283 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| RL451_RS13580 (RL451_13580) | - | 2737334..2738086 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| RL451_RS13585 (RL451_13585) | - | 2738102..2738299 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| RL451_RS13590 (RL451_13590) | - | 2738286..2738666 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| RL451_RS13595 (RL451_13595) | - | 2738721..2739044 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| RL451_RS13600 (RL451_13600) | - | 2739041..2739202 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| RL451_RS13605 (RL451_13605) | - | 2739297..2739599 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| RL451_RS13610 (RL451_13610) | - | 2739604..2739864 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| RL451_RS13615 (RL451_13615) | - | 2739873..2740136 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| RL451_RS13620 (RL451_13620) | - | 2740145..2742088 (+) | 1944 | WP_331385814.1 | AAA family ATPase | - |
| RL451_RS13625 (RL451_13625) | - | 2742090..2743010 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| RL451_RS13630 (RL451_13630) | - | 2743091..2743708 (+) | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| RL451_RS13635 (RL451_13635) | ssbA | 2743709..2744179 (+) | 471 | WP_000934760.1 | single-stranded DNA-binding protein | Machinery gene |
| RL451_RS13640 (RL451_13640) | - | 2744209..2745091 (+) | 883 | Protein_2644 | DnaD domain protein | - |
| RL451_RS13645 (RL451_13645) | - | 2745098..2745316 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| RL451_RS13650 (RL451_13650) | - | 2745325..2745729 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| RL451_RS13655 (RL451_13655) | - | 2745742..2746110 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| RL451_RS13660 (RL451_13660) | - | 2746114..2746356 (+) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| RL451_RS13665 (RL451_13665) | - | 2746371..2746619 (+) | 249 | WP_001065094.1 | DUF1024 family protein | - |
| RL451_RS13670 (RL451_13670) | - | 2746612..2747148 (+) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| RL451_RS13675 (RL451_13675) | - | 2747185..2747430 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| RL451_RS13680 (RL451_13680) | - | 2747427..2747633 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| RL451_RS13685 (RL451_13685) | - | 2747630..2748016 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| RL451_RS13690 (RL451_13690) | rinB | 2748013..2748162 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| RL451_RS13695 (RL451_13695) | - | 2748162..2748362 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| RL451_RS13700 (RL451_13700) | - | 2748390..2748806 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| RL451_RS13705 (RL451_13705) | - | 2749038..2749337 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=882378 RL451_RS13635 WP_000934760.1 2743709..2744179(+) (ssbA) [Staphylococcus aureus strain IPLA16]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=882378 RL451_RS13635 WP_000934760.1 2743709..2744179(+) (ssbA) [Staphylococcus aureus strain IPLA16]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |