Detailed information NTG0882256

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: RLT86_RS04430
• Genome accession: NZ_CP134601
• Coordinates: 927407..928525 (-)
• Length: 372 a.a.
• NCBI ID: WP_005129441.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain XH1022
• Function: mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 922407..933525

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RLT86_RS04400 (RLT86_04405)	-	923235..924083 (+)	849	WP_000336554.1	class II glutamine amidotransferase	-
RLT86_RS04405 (RLT86_04410)	-	924336..924791 (+)	456	WP_000782976.1	bacteriohemerythrin	-
RLT86_RS04410 (RLT86_04415)	-	924944..926011 (+)	1068	WP_000092403.1	hypothetical protein	-
RLT86_RS04415 (RLT86_04420)	-	926011..926334 (+)	324	WP_000442585.1	RnfH family protein	-
RLT86_RS04420 (RLT86_04425)	-	926389..926787 (-)	399	WP_001170994.1	outer membrane protein assembly factor BamE	-
RLT86_RS04425 (RLT86_04430)	fur	926899..927336 (+)	438	WP_001122847.1	ferric iron uptake transcriptional regulator	-
RLT86_RS04430 (RLT86_04435)	pilU	927407..928525 (-)	1119	WP_005129441.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
RLT86_RS04435 (RLT86_04440)	pilT	928545..929582 (-)	1038	WP_000355489.1	type IV pilus twitching motility protein PilT	Machinery gene
RLT86_RS04440 (RLT86_04445)	-	929709..930401 (+)	693	WP_005129437.1	YggS family pyridoxal phosphate-dependent enzyme	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 41891.09 Da
• Isoelectric Point: 6.6943

>NTDB_id=882256 RLT86_RS04430 WP_005129441.1 927407..928525(-) (pilU) [Acinetobacter baumannii strain XH1022]
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEIIGQLLHSIMSEKQRKEFAETRECNFAIMNRDKSA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPPVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLADEGPDQLSDGKQHLTFDRQ

Nucleotide

• Length: 1119 bp

>NTDB_id=882256 RLT86_RS04430 WP_005129441.1 927407..928525(-) (pilU) [Acinetobacter baumannii strain XH1022]
ATGGATTTTAATGACCTGCTCAACCTCATGGTTGAAAAAAAATCATCCGACCTCTTTATTACAGATGGCGTTGCACCATC
AATGAAGATTAACGGACAAATTGTTCCCATTTCAAAAAATAGCCTTTCAGGCGAAATTATTGGGCAACTATTACACTCCA
TCATGAGTGAAAAACAACGCAAAGAATTTGCAGAGACTCGTGAATGTAACTTTGCGATTATGAACCGTGATAAAAGTGCG
CGTTTTCGTGTCAGTGCTTTTCAGCAACGCGACATGCCAGGCATGGTACTACGTCGAATTGAAACCAAAATTCCTTCAAT
TGATGACTTGCAGTTACCACCTGTGCTTAAAGATTTATCTATGACCAAACGCGGCATTATTATTTTCGTAGGCGCGACAG
GTACAGGTAAATCCACTTCATTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAGGGCCATATCATTACCATTGAA
GACCCGATTGAGTTTATTCACGAACATGCAGGTTGCATCATTACTCAGCGTGAGGTCGGGATCGATACCGACTCATTTGA
AATTGCCTTGAAAAATACATTACGACAAGCGCCGGATGTCATCTTAATTGGTGAGATTCGTTCTCGTGAAGTCATGGACT
ACGCGATTGGCTTTGCTGAAACAGGCCATCTTGTATTAGCTACCATGCACGCCAACAACGCCAACCAAGCACTCGACCGT
ATTATTCACTTTTTTGAAAGTGACCGTCATAGCCAGCTTTATATGGACTTGTCACTTAACTTAAAGGCTATGATTGCGCA
GCAGCTCATTCCAACACCAGATGGTAATTCACGCCGTGCAGCAATTGAGATTTTAATTAACTCACCATTAATTTCAGACT
ACATCCGTAAAGGTGAAATTCATGAAATTAAAGATTTGATGAAACGCTCACGTGAACTTGGTATGCAGACCTTTGACCAA
GCTTTATTTGATTTATATAAAGCTGGTCAAATTACCTACAAAGATGCACTTAAACATGCTGACTCACCGAACGATTTACG
TTTAACCATTAAACTTGCAGATGAAGGTCCTGATCAATTATCAGACGGAAAACAGCATTTAACTTTTGACCGCCAGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (32-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Acinetobacter baylyi ADP1	75.661	100	0.769
pilU	Pseudomonas stutzeri DSM 10701	69.293	98.925	0.685
pilU	Vibrio cholerae strain A1552	54.054	99.462	0.538
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.486	93.011	0.395
pilT	Legionella pneumophila strain Lp02	39.645	90.86	0.36
pilT	Legionella pneumophila strain ERS1305867	39.645	90.86	0.36