Detailed information NTG0880830

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: RLO20_RS00700
• Genome accession: NZ_CP134538
• Coordinates: 119894..120928 (+)
• Length: 344 a.a.
• NCBI ID: WP_012678811.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. equi strain XJ5012
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 114894..125928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RLO20_RS00680 (RLO20_00680)	-	115287..115652 (+)	366	WP_012514777.1	DUF1033 family protein	-
RLO20_RS00685 (RLO20_00685)	-	116189..118192 (+)	2004	WP_012678808.1	DUF1430 domain-containing protein	-
RLO20_RS00690 (RLO20_00690)	-	118194..118841 (+)	648	WP_012678809.1	ATP-binding cassette domain-containing protein	-
RLO20_RS00695 (RLO20_00695)	comGA/cglA	119023..119961 (+)	939	WP_012678810.1	competence type IV pilus ATPase ComGA	Machinery gene
RLO20_RS00700 (RLO20_00700)	comYB	119894..120928 (+)	1035	WP_012678811.1	competence type IV pilus assembly protein ComGB	Machinery gene
RLO20_RS00705 (RLO20_00705)	comGC/cglC	120929..121252 (+)	324	WP_012514782.1	competence type IV pilus major pilin ComGC	Machinery gene
RLO20_RS00710 (RLO20_00710)	comGD	121230..121655 (+)	426	WP_012678812.1	competence type IV pilus minor pilin ComGD	-
RLO20_RS00715 (RLO20_00715)	comGE	121612..121902 (+)	291	WP_012678813.1	competence type IV pilus minor pilin ComGE	-
RLO20_RS00720 (RLO20_00720)	comYF	121889..122323 (+)	435	WP_012678814.1	competence type IV pilus minor pilin ComGF	Machinery gene
RLO20_RS00725 (RLO20_00725)	comGG	122301..122663 (+)	363	WP_012678815.1	competence type IV pilus minor pilin ComGG	-
RLO20_RS00730 (RLO20_00730)	-	122729..124071 (+)	1343	WP_165626751.1	IS3 family transposase	-
RLO20_RS00735 (RLO20_00735)	comYH	124156..125109 (+)	954	WP_012678816.1	class I SAM-dependent methyltransferase	Machinery gene

Sequence

Protein

• Length: 344 a.a.
• Molecular weight: 39431.69 Da
• Isoelectric Point: 9.4359

>NTDB_id=880830 RLO20_RS00700 WP_012678811.1 119894..120928(+) (comYB) [Streptococcus equi subsp. equi strain XJ5012]
MISFLRRDISIPGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNTLTDLLL
HLPHYFLGFCLLVLLLIGSFYLYAKSCSRLKLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQQMGDVF

Nucleotide

• Length: 1035 bp

>NTDB_id=880830 RLO20_RS00700 WP_012678811.1 119894..120928(+) (comYB) [Streptococcus equi subsp. equi strain XJ5012]
TTGATCAGCTTCTTGCGGAGGGACATCTCAATACCAGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAGGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGACTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATTATACTTTTGGGTTTTC
TAGTGGTTATCATGCTAGGCTTGCGTCATTACCTAATCCCTCAGCTAGAGAGTCAAAATACCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGTTTTTGTTTGCTTGTGCTGTTGCTAATTGGCTCTTTTTACCTATATGCCAAGTCCTG
TAGTCGGCTAAAACTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTAAGCCTAATGATTGAATATGGTGACATCAAATCAAAGCTTGGTCAGGAATTAGATATCT
ATTCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTTAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACAGATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (215-335)

• Type II secretion system (T2SS), protein F (T2SSF) (29-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	53.982	98.547	0.532
comYB	Streptococcus mutans UA159	53.982	98.547	0.532
comYB	Streptococcus gordonii str. Challis substr. CH1	52.059	98.837	0.515
comGB/cglB	Streptococcus mitis NCTC 12261	48.81	97.674	0.477
comGB/cglB	Streptococcus mitis SK321	49.249	96.802	0.477
comGB/cglB	Streptococcus pneumoniae Rx1	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae D39	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae R6	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae TIGR4	48.649	96.802	0.471
comGB	Lactococcus lactis subsp. cremoris KW2	46.933	94.767	0.445