Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   WMY90_RS01225 Genome accession   NZ_CP150875
Coordinates   233035..233631 (+) Length   198 a.a.
NCBI ID   WP_022096970.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TCI125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 228035..238631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMY90_RS01205 (WMY90_01205) - 228159..228383 (+) 225 WP_022096968.1 hypothetical protein -
  WMY90_RS01210 (WMY90_01210) - 228995..229849 (+) 855 WP_002946708.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  WMY90_RS01215 (WMY90_01215) - 229853..230689 (+) 837 WP_002946706.1 NAD(P)H-hydrate dehydratase -
  WMY90_RS01220 (WMY90_01220) pbp2b 230811..232925 (+) 2115 WP_180473182.1 penicillin-binding protein PBP2B -
  WMY90_RS01225 (WMY90_01225) recR 233035..233631 (+) 597 WP_022096970.1 recombination mediator RecR Machinery gene
  WMY90_RS01230 (WMY90_01230) - 233772..234568 (+) 797 Protein_231 PRD domain-containing protein -
  WMY90_RS01235 (WMY90_01235) ybeY 234788..235285 (+) 498 WP_002950224.1 rRNA maturation RNase YbeY -
  WMY90_RS01240 (WMY90_01240) - 235266..235670 (+) 405 WP_002946201.1 diacylglycerol kinase family protein -
  WMY90_RS01245 (WMY90_01245) era 235689..236588 (+) 900 WP_002946203.1 GTPase Era -
  WMY90_RS01250 (WMY90_01250) mutM 236635..237456 (+) 822 WP_022096972.1 DNA-formamidopyrimidine glycosylase -
  WMY90_RS01255 (WMY90_01255) coaE 237453..238046 (+) 594 WP_022096973.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21709.94 Da        Isoelectric Point: 4.5957

>NTDB_id=880833 WMY90_RS01225 WP_022096970.1 233035..233631(+) (recR) [Streptococcus thermophilus strain TCI125]
MLYPTPIAKLIDSFSKLPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCIICTDATRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=880833 WMY90_RS01225 WP_022096970.1 233035..233631(+) (recR) [Streptococcus thermophilus strain TCI125]
ATGCTTTATCCTACTCCAATTGCTAAACTGATTGATAGTTTTTCAAAACTTCCAGGAATTGGGGCTAAGACGGCGACACG
TCTGGCTTTCTATACCATTAGCATGTCTGATGAAGATGTCAATGATTTTGCAAAAAATCTTTTAGCAGCAAAACGTGAGT
TGACCTATTGTTCAGTTTGTGGTCGCTTGACTGATGATGACCCATGTATTATTTGTACGGATGCAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAGGACTCCAAAGATGTTTCTGCTATGGAAAAGATTCAGGAATATCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGATGATATTAATTTAAAAAGTTTGATTACCCGTCTTATGGATA
GCGAGGTTGACGAGGTCATCATCGCAACTAATGCAACGGCCGATGGTGAGGCAACCTCTATGTATATTTCACGGGTCCTC
AAACCTGCAGGTATTAAGGTGACCCGCCTAGCGCGTGGGCTGGCTGTTGGTTCTGACATCGAGTACGCTGATGAAGTAAC
CTTGCTAAGAGCCATCGAGAATCGAACAGAACTGTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475