Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   RJW51_RS06780 Genome accession   NZ_CP134491
Coordinates   1326164..1327066 (+) Length   300 a.a.
NCBI ID   WP_172016989.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1321164..1332066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS06750 (RJW51_06735) - 1321452..1322198 (-) 747 WP_024392849.1 amino acid ABC transporter ATP-binding protein -
  RJW51_RS06755 (RJW51_06740) - 1322203..1322880 (-) 678 WP_024392848.1 amino acid ABC transporter permease -
  RJW51_RS06760 (RJW51_06745) - 1322861..1323550 (-) 690 WP_397610513.1 amino acid ABC transporter permease -
  RJW51_RS06765 (RJW51_06750) ruvB 1323648..1324646 (+) 999 WP_172090046.1 Holliday junction branch migration DNA helicase RuvB -
  RJW51_RS06770 (RJW51_06755) - 1324646..1325392 (+) 747 WP_172090045.1 GNAT family N-acetyltransferase -
  RJW51_RS06775 (RJW51_06760) - 1325394..1326008 (+) 615 WP_172090044.1 HAD-IA family hydrolase -
  RJW51_RS06780 (RJW51_06765) comR 1326164..1327066 (+) 903 WP_172016989.1 helix-turn-helix domain-containing protein Regulator
  RJW51_RS06785 (RJW51_06770) - 1327275..1328495 (+) 1221 WP_172090043.1 Mur ligase family protein -
  RJW51_RS06790 (RJW51_06775) - 1328678..1330198 (+) 1521 WP_172090042.1 quinol oxidase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 35940.89 Da        Isoelectric Point: 4.6833

>NTDB_id=880381 RJW51_RS06780 WP_172016989.1 1326164..1327066(+) (comR) [Streptococcus parasuis strain 1628469]
MNDKEFGQRVRYLREKLAITREEFCEDELELSVRQLSRIEAGQCKPTFSKIGFIASRLNMGLYELMPDYVQLPERYSRLK
YEVLRTPTYGDQFLVEQRNQMLTIIYDEYYDELPEEEKIAIDAFQSTIDVFETRSNQFGKEILDDYFEQVHRKEKYSIND
LLIIRLYLEHIRNRDTDATIYHYFSSLVTHLPNQQEVMDSKELFILRDVILISIGILGDREDYEKIPSLFDALDKIMFLT
QDFQKKPILNLLKWKYELHVNKNRDAAQSYFEEATLFAKLIGNDYLVHKIKEDWEEDSRL

Nucleotide


Download         Length: 903 bp        

>NTDB_id=880381 RJW51_RS06780 WP_172016989.1 1326164..1327066(+) (comR) [Streptococcus parasuis strain 1628469]
GTGAACGATAAGGAATTTGGGCAACGTGTGAGATATTTACGGGAGAAACTAGCAATTACGCGTGAAGAATTCTGTGAGGA
TGAACTAGAATTATCTGTTCGTCAATTGAGTCGTATAGAAGCGGGACAATGCAAACCAACTTTTTCAAAGATAGGTTTTA
TAGCAAGCAGGTTGAATATGGGTTTATATGAGCTTATGCCGGATTATGTCCAACTTCCGGAACGCTATTCGCGTCTAAAA
TATGAGGTATTACGAACTCCTACCTATGGAGACCAATTTTTGGTAGAACAACGCAATCAAATGTTGACAATCATTTATGA
TGAATATTACGATGAGCTCCCAGAAGAAGAAAAAATAGCTATTGATGCTTTTCAGTCGACAATTGATGTATTTGAAACAC
GGTCTAATCAATTTGGAAAAGAGATTTTGGACGATTATTTTGAGCAAGTTCATCGTAAAGAAAAGTATTCGATAAATGAC
TTGTTAATCATTCGACTATATCTTGAGCATATTAGAAATAGGGACACTGACGCAACAATCTATCACTATTTTTCCTCACT
TGTTACCCACCTGCCTAATCAACAGGAGGTAATGGATTCAAAAGAGTTATTTATTCTAAGGGATGTTATATTAATCTCAA
TAGGGATTTTAGGGGATCGAGAAGACTATGAGAAAATCCCGTCTCTTTTTGATGCTTTAGATAAAATAATGTTTTTAACT
CAAGATTTTCAAAAGAAACCTATCTTAAACTTATTGAAGTGGAAATACGAGCTCCACGTTAATAAGAACCGAGATGCCGC
ACAGAGTTACTTTGAAGAGGCTACCCTTTTTGCGAAGCTAATTGGAAATGATTATCTAGTTCACAAAATTAAAGAAGACT
GGGAAGAGGATTCACGACTTTAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis 05ZYH33

61.873

99.667

0.617
  comR Streptococcus suis P1/7

61.873

99.667

0.617
  comR Streptococcus suis D9

56.478

100

0.567
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

42.215

96.333

0.407
  comR Streptococcus mutans UA159

40.134

99.667

0.4
  comR Streptococcus pyogenes MGAS8232

39.13

99.667

0.39
  comR Streptococcus pyogenes MGAS315

36.213

100

0.363