Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RJW51_RS06720 Genome accession   NZ_CP134491
Coordinates   1315485..1317638 (+) Length   717 a.a.
NCBI ID   WP_172090049.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310485..1322638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS06705 (RJW51_06690) - 1311149..1311895 (+) 747 WP_029751171.1 ABC transporter permease -
  RJW51_RS06710 (RJW51_06695) - 1311900..1313612 (+) 1713 WP_172090051.1 ATP-binding cassette domain-containing protein -
  RJW51_RS06715 (RJW51_06700) - 1313720..1314988 (+) 1269 WP_172090050.1 MerR family transcriptional regulator -
  RJW51_RS06720 (RJW51_06705) comA 1315485..1317638 (+) 2154 WP_172090049.1 peptide cleavage/export ABC transporter ComA Regulator
  RJW51_RS06725 (RJW51_06710) comB 1317650..1319002 (+) 1353 WP_172090048.1 bacteriocin secretion accessory protein Regulator
  RJW51_RS06730 (RJW51_06715) - 1319391..1319570 (+) 180 WP_024392853.1 hypothetical protein -
  RJW51_RS06735 (RJW51_06720) - 1319571..1319771 (+) 201 WP_024397558.1 hypothetical protein -
  RJW51_RS06740 (RJW51_06725) - 1319788..1319979 (+) 192 WP_024397557.1 hypothetical protein -
  RJW51_RS06745 (RJW51_06730) - 1320570..1321439 (-) 870 WP_172090047.1 transporter substrate-binding domain-containing protein -
  RJW51_RS06750 (RJW51_06735) - 1321452..1322198 (-) 747 WP_024392849.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 81153.44 Da        Isoelectric Point: 7.1656

>NTDB_id=880379 RJW51_RS06720 WP_172090049.1 1315485..1317638(+) (comA) [Streptococcus parasuis strain 1628469]
MKFGKRHYRAQVDTRDCGVAALAMILEYYRSHHSLASLREMAKTTMEGTTAFGLVKVAEELGFETRAIKADMSLFSMREA
VYPFIAHVVKDGTLLHYYVVIGADKKYIYIADPDPSVKLTKLSHEQFEKEWTGVSLFMAPKPEYQPHKEKSRGLLSFIPL
LTRQKGLITNIVLATLLVTFINIVGSYYLQSIIDTYVPNQMKTTLGVISVGLVVVYALQQLLSYAQEYLLIILGQRLSID
VILSYIRHVFHLPMSFFATRRTGEIVSRFTDANSIIDALASTILSIFLDVSIVVVVSVVLFSQNVYLFFISLLALPIYTL
IIFAFMKPFEKMNQEVMESNAILSSSIIEDINGIETIKSLTSEKQRYQKIDREFVDYLQKSFAYNKAEGQQKVLKRLAQL
VLNVAILWLGACLVMDQKMTLGQLITFNTLLVYFTNPLENIINLQTKLQTAQVANTRLNEVYLVESEFAEKKSVTDLSLL
SGDIECNKVHYKYGYGRDVLTDINLKIKRGEKVSFVGVSGSGKTTLAKMMVDFYDPYKGEIRLNNVNINQIDKQTLRQHI
NYLPQQPYVFNGTILENLLLGAKEGTSQEDILWAVEMACIREDIEKMPLNYQTELTSDGAGISGGQRQRIALARALLTDA
PIMILDEATSSLDILTEKRIVDNLLSLDKTLIFIAHRLTIAERTEHIVVLDKGRIVEQGSHKELLDKQGFYEYLVNS

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=880379 RJW51_RS06720 WP_172090049.1 1315485..1317638(+) (comA) [Streptococcus parasuis strain 1628469]
ATGAAATTTGGAAAACGTCATTATAGAGCACAAGTAGATACACGAGACTGTGGTGTAGCAGCGCTTGCTATGATCTTGGA
ATATTATCGTTCTCATCATTCTTTAGCAAGTTTGCGAGAAATGGCAAAGACAACTATGGAAGGCACGACAGCATTTGGTT
TAGTAAAGGTTGCTGAAGAGCTAGGGTTTGAGACGCGTGCGATTAAGGCAGATATGTCTCTGTTTTCGATGAGGGAAGCG
GTCTATCCTTTCATTGCCCATGTGGTAAAAGATGGCACGTTACTACATTATTATGTTGTCATTGGGGCAGATAAGAAATA
TATCTATATTGCAGACCCGGATCCATCAGTGAAATTAACAAAGTTATCCCATGAACAATTTGAAAAGGAGTGGACAGGAG
TTTCGCTATTCATGGCTCCCAAACCGGAATATCAACCTCATAAAGAGAAGAGTCGTGGGTTACTTTCTTTCATTCCATTG
TTGACTAGACAAAAGGGATTGATTACAAATATTGTTCTCGCAACGCTCTTGGTTACTTTCATCAACATTGTGGGCTCCTA
TTATTTACAATCCATTATTGACACTTATGTTCCAAATCAGATGAAAACAACATTAGGTGTCATTTCAGTCGGTTTGGTGG
TTGTTTATGCCCTGCAACAATTGTTATCTTATGCCCAGGAGTATTTATTAATCATTCTTGGACAACGACTCTCTATTGAT
GTGATTTTGTCTTATATTAGACATGTTTTTCATCTACCAATGTCATTTTTTGCTACTCGGCGAACTGGGGAAATTGTTTC
ACGATTTACAGATGCCAATTCTATTATTGATGCTTTAGCTAGTACCATACTATCAATATTTTTGGATGTATCGATTGTTG
TGGTTGTTTCGGTAGTGCTGTTTAGTCAGAATGTCTATCTCTTCTTTATTTCCTTATTGGCATTGCCAATCTATACTCTA
ATCATTTTTGCGTTTATGAAGCCATTTGAAAAGATGAATCAAGAAGTGATGGAAAGTAATGCAATTCTTTCTTCGTCTAT
TATTGAAGATATCAATGGTATTGAAACCATAAAATCATTGACAAGTGAGAAACAACGTTATCAGAAAATTGATAGAGAAT
TTGTAGATTATTTACAAAAATCATTTGCATACAACAAGGCCGAAGGGCAGCAAAAAGTGTTAAAGCGCTTGGCCCAACTC
GTATTAAATGTAGCTATTCTTTGGTTAGGAGCCTGTCTAGTTATGGATCAGAAAATGACTTTGGGGCAGCTAATCACCTT
CAATACCTTATTGGTCTATTTCACGAATCCATTGGAAAATATAATCAATTTACAAACAAAACTACAGACAGCTCAAGTTG
CCAATACCCGATTGAACGAGGTCTATTTGGTTGAATCGGAATTTGCTGAAAAGAAATCCGTGACGGACCTTTCGTTACTT
TCGGGGGATATTGAATGCAACAAAGTGCATTATAAATATGGCTATGGTAGGGATGTTTTGACAGATATTAATTTGAAAAT
TAAACGAGGGGAAAAGGTCTCCTTTGTTGGAGTTTCTGGTTCTGGGAAGACGACGTTGGCTAAAATGATGGTGGATTTTT
ATGATCCTTACAAGGGTGAGATTCGATTAAATAATGTCAACATTAATCAAATCGATAAGCAAACACTTCGTCAACATATC
AATTATCTTCCACAGCAACCCTATGTTTTTAATGGGACAATTCTCGAAAATCTATTGCTAGGTGCAAAAGAGGGAACAAG
TCAAGAAGATATCTTGTGGGCTGTTGAAATGGCATGTATTAGAGAAGATATTGAAAAAATGCCACTGAATTACCAAACGG
AATTGACTTCTGATGGAGCTGGAATTTCCGGTGGACAACGGCAGCGAATTGCCTTGGCGCGTGCCCTTCTTACGGATGCC
CCTATTATGATTTTGGATGAGGCAACCAGTAGTCTGGATATTTTGACAGAGAAGCGTATTGTGGACAACCTATTGTCATT
GGACAAAACTCTAATTTTTATTGCACATCGGTTAACCATTGCAGAGCGTACTGAACATATTGTTGTGCTAGATAAGGGAA
GAATTGTAGAACAAGGGAGTCATAAGGAATTGTTAGACAAGCAAGGTTTCTATGAATATTTAGTAAATAGTTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(170-438)

ABC transporter (ABC_tran)

(500-650)

Peptidase C39 family (Peptidase_C39)

(7-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus pneumoniae Rx1

79.637

100

0.796
  comA Streptococcus pneumoniae D39

79.637

100

0.796
  comA Streptococcus pneumoniae R6

79.637

100

0.796
  comA Streptococcus mitis NCTC 12261

79.498

100

0.795
  comA Streptococcus pneumoniae TIGR4

79.358

100

0.794
  comA Streptococcus mitis SK321

79.358

100

0.794
  comA Streptococcus gordonii str. Challis substr. CH1

77.266

100

0.773
  comA/nlmT Streptococcus mutans UA159

63.459

100

0.635