Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   RJW51_RS06395 Genome accession   NZ_CP134491
Coordinates   1259607..1260788 (+) Length   393 a.a.
NCBI ID   WP_172089867.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1254607..1265788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS06365 (RJW51_06350) - 1255237..1257816 (+) 2580 WP_172089869.1 YfhO family protein -
  RJW51_RS06385 (RJW51_06370) - 1258245..1258928 (-) 684 WP_172089868.1 DUF1275 family protein -
  RJW51_RS06390 (RJW51_06375) rlmH 1258935..1259414 (-) 480 WP_172017544.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RJW51_RS06395 (RJW51_06380) htrA 1259607..1260788 (+) 1182 WP_172089867.1 trypsin-like peptidase domain-containing protein Regulator
  RJW51_RS06400 (RJW51_06385) spo0J 1260851..1261609 (+) 759 WP_160864071.1 ParB/RepB/Spo0J family partition protein Regulator
  RJW51_RS06405 (RJW51_06390) dnaA 1261812..1263176 (+) 1365 WP_172089866.1 chromosomal replication initiator protein DnaA -
  RJW51_RS06410 (RJW51_06395) dnaN 1263331..1264467 (+) 1137 WP_024391649.1 DNA polymerase III subunit beta -
  RJW51_RS06415 (RJW51_06400) - 1264559..1265440 (+) 882 WP_172089865.1 diacylglycerol kinase family protein -
  RJW51_RS06420 (RJW51_06405) - 1265450..1265653 (+) 204 WP_024404576.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 41145.75 Da        Isoelectric Point: 4.2698

>NTDB_id=880377 RJW51_RS06395 WP_172089867.1 1259607..1260788(+) (htrA) [Streptococcus parasuis strain 1628469]
MKKFLKFVILFVVGFLGGIGGYYFASSTLTQGNSTSNQANTTSVSNVQYSNDTSTTQAVEKVQDAVVSVINYQTQSSNSL
SSIFGNIESSDELAVAGEGSGVIYKKDGDTAYIVTNNHVISGAEKIDILLASGEKLSGELVGADTYSDIAVIKITADKVT
TVAEFANSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQTENGQTISTNAIQTDTAINPGNSGGPLINIQGQ
VIGINSSKITSSSVSSSGVAVEGMGFAIPSNDAVQIINQLETNGKVTRPALGVQMVNLTDLSTSQLEKAGLANTDLTSGV
LIVSTQSGLPADGKFEPYDVIVEIDGETIENKSDLQSELYKHQIGDTITVTYYRNNKKMTVDIKLTHSTDDLS

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=880377 RJW51_RS06395 WP_172089867.1 1259607..1260788(+) (htrA) [Streptococcus parasuis strain 1628469]
ATGAAAAAATTTTTGAAATTTGTTATTTTGTTTGTTGTTGGATTTTTAGGAGGAATTGGTGGGTATTACTTTGCTTCATC
AACTCTGACTCAAGGAAATTCTACTTCAAATCAAGCAAATACAACCAGCGTGAGCAATGTTCAATATAGCAACGATACCT
CCACCACTCAAGCTGTGGAAAAAGTTCAAGATGCTGTTGTCTCCGTTATCAATTATCAAACTCAATCATCAAATAGCCTC
AGTTCTATTTTTGGCAACATTGAAAGTTCAGATGAGCTAGCTGTTGCTGGAGAAGGTTCAGGTGTTATTTATAAAAAAGA
TGGTGATACAGCATATATTGTTACAAACAACCACGTAATTTCAGGTGCTGAAAAAATCGATATACTTTTGGCTTCTGGAG
AAAAGCTTAGCGGAGAACTCGTAGGTGCAGATACTTATTCAGACATTGCTGTTATCAAAATTACTGCAGATAAAGTGACC
ACTGTTGCTGAATTTGCTAATTCAGACACAATTAAAGTTGGAGAAACTGCGATTGCAATTGGTAGCCCATTAGGAAGTGT
CTATGCAAATACAGTAACTCAGGGGATTATTTCTAGTCTCAGTCGTACAGTAACTTCACAAACAGAAAATGGCCAAACAA
TCTCAACAAATGCTATCCAGACTGATACAGCCATTAACCCAGGTAACTCAGGTGGACCACTTATCAATATTCAAGGACAA
GTTATTGGTATCAACTCAAGTAAAATAACCTCTAGTTCTGTCAGCAGTTCAGGAGTTGCAGTAGAAGGAATGGGCTTTGC
CATTCCATCAAATGATGCTGTACAGATTATTAATCAATTAGAAACAAATGGTAAAGTTACTCGTCCAGCTCTTGGTGTAC
AAATGGTCAATCTAACAGACCTGTCTACTAGTCAATTAGAAAAAGCAGGATTAGCAAATACAGACTTAACATCTGGAGTA
CTAATTGTATCTACTCAATCAGGTTTGCCAGCTGATGGAAAATTTGAACCATATGATGTCATTGTCGAAATCGATGGTGA
AACCATTGAAAATAAGAGTGATTTACAAAGTGAACTTTACAAGCATCAAATTGGCGACACCATAACTGTTACCTATTATA
GAAATAATAAGAAAATGACCGTTGACATTAAGTTGACACATTCAACGGATGATTTGTCATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(289-385)

Trypsin-like peptidase domain (Trypsin_2)

(99-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

62.025

100

0.623
  htrA Streptococcus gordonii str. Challis substr. CH1

59.898

100

0.601
  htrA Streptococcus pneumoniae D39

58.673

99.746

0.585
  htrA Streptococcus pneumoniae TIGR4

58.673

99.746

0.585
  htrA Streptococcus pneumoniae R6

58.673

99.746

0.585
  htrA Streptococcus pneumoniae Rx1

58.673

99.746

0.585
  htrA Streptococcus mitis NCTC 12261

58.163

99.746

0.58