Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RJW51_RS06400 Genome accession   NZ_CP134491
Coordinates   1260851..1261609 (+) Length   252 a.a.
NCBI ID   WP_160864071.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1255851..1266609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS06385 (RJW51_06370) - 1258245..1258928 (-) 684 WP_172089868.1 DUF1275 family protein -
  RJW51_RS06390 (RJW51_06375) rlmH 1258935..1259414 (-) 480 WP_172017544.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RJW51_RS06395 (RJW51_06380) htrA 1259607..1260788 (+) 1182 WP_172089867.1 trypsin-like peptidase domain-containing protein Regulator
  RJW51_RS06400 (RJW51_06385) spo0J 1260851..1261609 (+) 759 WP_160864071.1 ParB/RepB/Spo0J family partition protein Regulator
  RJW51_RS06405 (RJW51_06390) dnaA 1261812..1263176 (+) 1365 WP_172089866.1 chromosomal replication initiator protein DnaA -
  RJW51_RS06410 (RJW51_06395) dnaN 1263331..1264467 (+) 1137 WP_024391649.1 DNA polymerase III subunit beta -
  RJW51_RS06415 (RJW51_06400) - 1264559..1265440 (+) 882 WP_172089865.1 diacylglycerol kinase family protein -
  RJW51_RS06420 (RJW51_06405) - 1265450..1265653 (+) 204 WP_024404576.1 DUF951 domain-containing protein -
  RJW51_RS06425 (RJW51_06410) - 1265755..1266102 (+) 348 WP_172089864.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28942.32 Da        Isoelectric Point: 8.4120

>NTDB_id=880378 RJW51_RS06400 WP_160864071.1 1260851..1261609(+) (spo0J) [Streptococcus parasuis strain 1628469]
MEELHYLKIKDIQANPYQPRLHFDEEKLLELAQSIKENGVIQPIIVRRSPLIGFELLAGERRLRASQLAGLTEIPAVIKH
LSDDDLLYQAIIENLQRSDLNPIEEAHSYEKLIEKGLTHDEIAQIMGKSRPYITNLLRLLHLSESTRQAVETGKITQGHA
RQLVALSEKQQAEWVQKIQEKDISVRQLETILSSKKKKTIRKSNQFVAEEEEKLAKLLGTKVTIQQKKNGSGQLTIQFQN
IEEFERIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=880378 RJW51_RS06400 WP_160864071.1 1260851..1261609(+) (spo0J) [Streptococcus parasuis strain 1628469]
ATGGAAGAACTACACTATCTCAAAATAAAAGATATTCAGGCCAATCCCTATCAACCAAGATTGCATTTTGATGAAGAAAA
ATTATTGGAATTAGCTCAATCTATCAAAGAAAATGGCGTCATTCAACCTATTATTGTTCGCAGATCACCGCTGATTGGTT
TTGAGTTACTTGCTGGTGAAAGACGATTAAGAGCTAGTCAACTAGCGGGATTAACAGAGATTCCAGCAGTCATCAAGCAT
CTGTCTGATGATGATTTACTCTACCAAGCTATCATAGAAAACTTACAACGCTCTGACCTCAATCCTATTGAGGAGGCTCA
TTCCTACGAAAAGTTGATAGAAAAAGGCTTAACACATGATGAGATTGCCCAAATCATGGGAAAATCACGACCATATATCA
CTAATCTTCTTCGTTTACTCCATTTATCCGAATCTACGAGGCAAGCAGTAGAAACAGGAAAAATCACACAAGGGCATGCT
AGACAGCTAGTAGCGCTATCAGAAAAACAACAAGCAGAATGGGTTCAAAAAATCCAAGAAAAGGATATCAGTGTACGACA
GTTAGAAACAATACTATCCTCTAAAAAGAAAAAAACAATTAGAAAATCCAACCAATTTGTTGCAGAAGAAGAAGAGAAAT
TAGCAAAACTACTTGGTACCAAGGTAACAATCCAACAAAAGAAAAATGGATCGGGACAACTGACTATTCAATTTCAAAAC
ATCGAAGAATTTGAAAGAATTATCAACAGTCTGAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(145-191)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.906

100

0.563