Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   RJW53_RS00800 Genome accession   NZ_CP134488
Coordinates   125674..125967 (+) Length   97 a.a.
NCBI ID   WP_024413203.1    Uniprot ID   A0AAP6A856
Organism   Streptococcus suis strain NLS50     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 120674..130967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW53_RS00770 (RJW53_00770) - 121696..122061 (+) 366 WP_023369079.1 DUF1033 family protein -
  RJW53_RS00775 (RJW53_00775) - 122096..123046 (-) 951 Protein_119 S66 peptidase family protein -
  RJW53_RS00780 (RJW53_00780) comYA 123132..124082 (+) 951 WP_044760311.1 competence type IV pilus ATPase ComGA Machinery gene
  RJW53_RS00785 (RJW53_00785) comYB 123994..125031 (+) 1038 WP_257116212.1 competence type IV pilus assembly protein ComGB Machinery gene
  RJW53_RS00790 (RJW53_00790) comYC 125033..125314 (+) 282 WP_074389246.1 competence type IV pilus major pilin ComGC Machinery gene
  RJW53_RS00795 (RJW53_00795) comGD 125295..125702 (+) 408 WP_074389247.1 competence type IV pilus minor pilin ComGD -
  RJW53_RS00800 (RJW53_00800) comYE 125674..125967 (+) 294 WP_024413203.1 competence type IV pilus minor pilin ComGE Machinery gene
  RJW53_RS00805 (RJW53_00805) comGF/cglF 125954..126388 (+) 435 WP_074389248.1 competence type IV pilus minor pilin ComGF Machinery gene
  RJW53_RS00810 (RJW53_00810) comGG 126366..126776 (+) 411 WP_074392769.1 competence type IV pilus minor pilin ComGG -
  RJW53_RS00815 (RJW53_00815) - 127257..127682 (-) 426 WP_226319165.1 ArpU family phage packaging/lysis transcriptional regulator -
  RJW53_RS00820 (RJW53_00820) - 128006..128581 (-) 576 WP_074392204.1 hypothetical protein -
  RJW53_RS00825 (RJW53_00825) - 128602..128775 (-) 174 WP_171840772.1 hypothetical protein -
  RJW53_RS00830 (RJW53_00830) - 129089..130525 (-) 1437 WP_257116214.1 phage/plasmid primase, P4 family -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10727.62 Da        Isoelectric Point: 9.8358

>NTDB_id=880305 RJW53_RS00800 WP_024413203.1 125674..125967(+) (comYE) [Streptococcus suis strain NLS50]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQTGQDNLALNGVTVQVQRTAD
KIIVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=880305 RJW53_RS00800 WP_024413203.1 125674..125967(+) (comYE) [Streptococcus suis strain NLS50]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACTCTAGTGACCAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCAGGTCGCAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCACAGATGGCTGTTCAGACCGGGCAAGATAACCTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACAGCGGAT
AAGATCATTGTTTTCCACGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

54.639

100

0.546
  comYE Streptococcus mutans UA159

54.639

100

0.546
  comGE/cglE Streptococcus pneumoniae Rx1

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae D39

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae R6

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae TIGR4

41.304

94.845

0.392
  comGE/cglE Streptococcus mitis SK321

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis NCTC 12261

40.217

94.845

0.381