Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RJW54_RS04970 Genome accession   NZ_CP134487
Coordinates   995005..995847 (-) Length   280 a.a.
NCBI ID   WP_002936492.1    Uniprot ID   -
Organism   Streptococcus suis strain MY1C3_3B     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 990005..1000847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS04945 (RJW54_04925) - 990064..990888 (-) 825 WP_029174501.1 replication initiator protein A -
  RJW54_RS04950 (RJW54_04930) - 990885..991058 (-) 174 WP_006738653.1 hypothetical protein -
  RJW54_RS04955 (RJW54_04935) rplL 991318..991683 (-) 366 WP_002936483.1 50S ribosomal protein L7/L12 -
  RJW54_RS04960 (RJW54_04940) rplJ 991749..992243 (-) 495 WP_002936486.1 50S ribosomal protein L10 -
  RJW54_RS04965 (RJW54_04945) topA 992819..994912 (-) 2094 WP_024394484.1 type I DNA topoisomerase -
  RJW54_RS04970 (RJW54_04950) dprA 995005..995847 (-) 843 WP_002936492.1 DNA-processing protein DprA Machinery gene
  RJW54_RS04975 (RJW54_04955) - 995906..996367 (-) 462 Protein_948 sugar O-acetyltransferase -
  RJW54_RS04980 (RJW54_04960) - 996509..996820 (+) 312 WP_014637902.1 rhodanese-like domain-containing protein -
  RJW54_RS04985 (RJW54_04965) - 996917..997468 (+) 552 WP_024394485.1 DUF1836 domain-containing protein -
  RJW54_RS04990 (RJW54_04970) - 997458..998108 (+) 651 WP_002936498.1 hemolysin III family protein -
  RJW54_RS04995 (RJW54_04975) - 998141..999151 (-) 1011 WP_029174502.1 YdcF family protein -
  RJW54_RS05000 (RJW54_04980) - 999154..999927 (-) 774 WP_024387771.1 ribonuclease HII -
  RJW54_RS05005 (RJW54_04985) ylqF 999914..1000765 (-) 852 WP_024394486.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31261.11 Da        Isoelectric Point: 8.4451

>NTDB_id=880265 RJW54_RS04970 WP_002936492.1 995005..995847(-) (dprA) [Streptococcus suis strain MY1C3_3B]
MNNFELFKWKKAGLTNLNVNKVLAYQEKHGKKLTLRNVAIVSECKNPVLFMENYKNLDTKACREEFNKYPSFSILDDIYP
LALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGIQSVQKIIKELNNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDNIYPKENKDLQTYIGKHHLVLTEYEAGAQPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
EVYAIPGSIMDGKSDGCHHLIQEGAKCVTSGLDIISEYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=880265 RJW54_RS04970 WP_002936492.1 995005..995847(-) (dprA) [Streptococcus suis strain MY1C3_3B]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCGGGTTTGACCAATCTTAATGTGAATAAAGTTTTGGCCTATCAAGA
AAAACACGGAAAAAAATTGACCTTGCGAAATGTCGCTATAGTGTCTGAATGTAAAAATCCAGTGCTATTTATGGAAAATT
ATAAGAATCTAGATACAAAAGCCTGTCGCGAGGAATTTAATAAGTATCCATCATTTTCAATTTTAGATGACATCTATCCT
TTGGCGCTCAAACAGATTTACAATCCGCCTGTACTTTTGTTTTATCAAGGGGATTTAGAATTGCTAGAAAAATCAAAGCT
TGCAGTCGTTGGTACACGAAATGCCAGCAAAAATGGTATTCAGTCTGTTCAGAAGATTATCAAAGAACTCAACAATCGCT
TTGTCATTGTCAGTGGTTTGGCAAGAGGAATTGATACAGCTGCTCATATTGCTAGCCTGAAAAATGGTGGACAAACCATT
GCTGTAATTGGAACAGGTTTAGATAATATTTATCCAAAAGAAAATAAAGATTTGCAGACCTATATCGGAAAACACCATTT
GGTGCTGACAGAGTATGAAGCTGGTGCTCAGCCACTCAAATACCATTTTCCAGAACGAAATCGCATCATTGCTGGGTTGG
TAGAAGGATTGGTAGTCTGTGAGGCTAAAATGCGGTCTGGTAGCTTGATTACCTGCGAACGTGCCTTGGAAGAAGGAAGA
GAAGTCTATGCTATTCCAGGTTCCATTATGGACGGAAAATCAGATGGTTGTCATCATCTGATTCAAGAGGGAGCAAAGTG
CGTTACATCAGGCTTGGACATCATTTCTGAGTATCAATTTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

69.286

100

0.693
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis SK321

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.571

100

0.636
  dprA Lactococcus lactis subsp. cremoris KW2

60.357

100

0.604
  dprA Legionella pneumophila strain ERS1305867

41.7

88.214

0.368
  dprA Bacillus subtilis subsp. subtilis str. 168

50.746

71.786

0.364