Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RJW49_RS05585 Genome accession   NZ_CP134477
Coordinates   1063536..1064378 (+) Length   280 a.a.
NCBI ID   WP_074393456.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1058536..1069378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS05550 (RJW49_05550) ylqF 1058553..1059404 (+) 852 WP_074393453.1 ribosome biogenesis GTPase YlqF -
  RJW49_RS05555 (RJW49_05555) - 1059391..1060164 (+) 774 WP_014735828.1 ribonuclease HII -
  RJW49_RS05560 (RJW49_05560) - 1060167..1061177 (+) 1011 WP_074393454.1 YdcF family protein -
  RJW49_RS05565 (RJW49_05565) - 1061210..1061860 (-) 651 WP_014735830.1 hemolysin III family protein -
  RJW49_RS05570 (RJW49_05570) - 1061850..1062401 (-) 552 WP_014735831.1 DUF1836 domain-containing protein -
  RJW49_RS05575 (RJW49_05575) - 1062498..1062779 (-) 282 WP_079849560.1 rhodanese-like domain-containing protein -
  RJW49_RS05580 (RJW49_05580) - 1062918..1063475 (+) 558 WP_014735833.1 sugar O-acetyltransferase -
  RJW49_RS05585 (RJW49_05585) dprA 1063536..1064378 (+) 843 WP_074393456.1 DNA-processing protein DprA Machinery gene
  RJW49_RS05590 (RJW49_05590) topA 1064471..1066564 (+) 2094 WP_004195696.1 type I DNA topoisomerase -
  RJW49_RS05595 (RJW49_05595) rplJ 1067133..1067627 (+) 495 WP_002936486.1 50S ribosomal protein L10 -
  RJW49_RS05600 (RJW49_05600) rplL 1067693..1068058 (+) 366 WP_002936483.1 50S ribosomal protein L7/L12 -
  RJW49_RS05605 (RJW49_05605) - 1068183..1068932 (+) 750 WP_044755838.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31268.13 Da        Isoelectric Point: 8.7846

>NTDB_id=880217 RJW49_RS05585 WP_074393456.1 1063536..1064378(+) (dprA) [Streptococcus suis strain NLS40]
MNNFELFKWKKAGLTNLNVNKVLAYQEKHGKKLTLRNIAVVSGSKNPVLFMENYKNLDIKACREEFNKYPSFSILDDIYP
LALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGIQSVQKIIKELNNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDNIYPKENKDLQTYIGKHHLVLTEYEPNAQPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
EVYAIPGSIMDGKSDGCHHLIQEGAKCVTSGLDIISEYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=880217 RJW49_RS05585 WP_074393456.1 1063536..1064378(+) (dprA) [Streptococcus suis strain NLS40]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCAGGTTTGACCAATCTTAATGTGAATAAAGTTTTGGCCTATCAAGA
AAAACACGGTAAAAAATTGACTTTGCGCAATATCGCTGTCGTTTCTGGAAGTAAAAATCCAGTGTTATTTATGGAAAACT
ATAAGAATTTGGATATCAAAGCCTGTCGCGAGGAATTTAATAAATATCCTTCCTTTTCAATTTTGGATGACATCTATCCT
TTGGCGCTCAAACAGATTTACAATCCACCTGTACTTTTGTTTTATCAAGGGGATTTAGAATTGCTAGAAAAATCAAAGCT
TGCAGTCGTTGGTACACGAAATGCAAGTAAAAATGGTATTCAGTCTGTTCAGAAAATTATCAAGGAACTAAATAATCGTT
TTGTCATTGTTAGTGGTCTGGCAAGGGGAATTGACACAGCTGCTCATATTGCTAGCCTGAAAAATGGTGGACAAACCATT
GCTGTAATCGGAACAGGTTTAGATAATATTTATCCAAAAGAAAATAAGGATTTGCAGACCTATATTGGAAAACACCATTT
GGTGCTGACAGAGTATGAACCAAATGCCCAGCCTTTAAAATACCATTTTCCTGAGCGAAATCGCATTATAGCTGGTTTGG
TGGAAGGATTGGTAGTCTGCGAGGCAAAAATGCGGTCGGGTAGCTTGATTACCTGCGAACGTGCTTTGGAAGAAGGAAGA
GAAGTCTATGCTATTCCAGGTTCCATTATGGACGGAAAATCAGATGGTTGTCATCATCTGATTCAAGAGGGAGCAAAGTG
CGTTACATCAGGCTTGGACATCATTTCTGAGTATCAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

69.286

100

0.693
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.929

100

0.639
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.929

100

0.639
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.929

100

0.639
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.929

100

0.639
  dprA/cilB/dalA Streptococcus mitis SK321

63.929

100

0.639
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.929

100

0.639
  dprA Lactococcus lactis subsp. cremoris KW2

60

100

0.6
  dprA Vibrio campbellii strain DS40M4

36.519

100

0.382
  dprA Bacillus subtilis subsp. subtilis str. 168

51.244

71.786

0.368
  dprA Legionella pneumophila strain ERS1305867

42.324

86.071

0.364