Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RJD39_RS10170 Genome accession   NZ_CP134277
Coordinates   2231608..2232834 (+) Length   408 a.a.
NCBI ID   WP_406732019.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain 21FBVib0096     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2226608..2237834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD39_RS10160 (RJD39_10150) pilA 2229414..2229872 (+) 459 WP_009387600.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RJD39_RS10165 (RJD39_10155) pilB 2229872..2231554 (+) 1683 WP_406732018.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RJD39_RS10170 (RJD39_10160) pilC 2231608..2232834 (+) 1227 WP_406732019.1 type II secretion system F family protein Machinery gene
  RJD39_RS10175 (RJD39_10165) pilD 2232940..2233809 (+) 870 WP_069447149.1 A24 family peptidase Machinery gene
  RJD39_RS10180 (RJD39_10170) coaE 2233814..2234422 (+) 609 WP_009387604.1 dephospho-CoA kinase -
  RJD39_RS10185 (RJD39_10175) zapD 2234457..2235197 (+) 741 WP_005593976.1 cell division protein ZapD -
  RJD39_RS10190 (RJD39_10180) yacG 2235272..2235466 (+) 195 WP_005593974.1 DNA gyrase inhibitor YacG -
  RJD39_RS10195 (RJD39_10185) rplS 2235734..2236087 (-) 354 WP_005593972.1 50S ribosomal protein L19 -
  RJD39_RS10200 (RJD39_10190) trmD 2236137..2236886 (-) 750 WP_009387605.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RJD39_RS10205 (RJD39_10195) rimM 2236914..2237468 (-) 555 WP_005593970.1 ribosome maturation factor RimM -
  RJD39_RS10210 (RJD39_10200) rpsP 2237493..2237741 (-) 249 WP_005593968.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45659.01 Da        Isoelectric Point: 10.2692

>NTDB_id=879600 RJD39_RS10170 WP_406732019.1 2231608..2232834(+) (pilC) [Vibrio scophthalmi strain 21FBVib0096]
MNKKSQHRLKIYRWKGTNPVGRRVTGKYLAFRESDVRQRLKQQKIRITQLTSHKLSWLQRQLETVKPKEITLLTRQLATI
LDTGIPLVQALKLVNDNSKKSGMLALLLTITSQVEAGLPLSQALLKATHQFDSLYIDLVATGEATGQLNQVFSRIAEHRE
KSEHLKAKVIKAMIYPSIVLLTALAVSWVMLTIVIPEFDSMFQSFGAELPWFTQQVLSLSYFAREQGGTIAISMVSSLLL
CKWAQARSSRCRIYLSRISLRLPLIGPIISKAAIAKFSRTMATSFSAGIPILSCLKSAAKTTNQLYYQVALERVLKDTAA
GMPFYIAMRDSDTFPEMPLQMLMIGEEAGKLDEILIKIATIYEKEIDDTVDNLGKIIEPAIIIFLSIVVGSLVIAIYLPI
FNLMNVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=879600 RJD39_RS10170 WP_406732019.1 2231608..2232834(+) (pilC) [Vibrio scophthalmi strain 21FBVib0096]
ATGAATAAAAAATCACAGCACCGGTTGAAAATCTATCGCTGGAAGGGAACCAACCCTGTGGGTCGGCGTGTCACGGGTAA
ATACTTGGCATTCCGTGAGAGCGATGTTCGTCAGCGATTAAAGCAACAAAAGATCCGCATCACCCAATTAACGTCACACA
AACTTTCTTGGCTTCAGCGCCAACTCGAAACGGTTAAGCCTAAAGAGATCACCTTACTTACCCGCCAATTAGCCACCATT
CTCGATACTGGGATTCCGCTCGTTCAAGCGCTCAAACTGGTCAACGACAACAGCAAAAAATCCGGAATGCTCGCCCTACT
CCTAACGATAACCAGCCAAGTTGAAGCAGGCCTTCCTCTCAGCCAGGCCTTATTAAAAGCAACGCATCAGTTTGATTCTC
TCTATATCGATCTTGTCGCGACGGGGGAAGCGACTGGACAGCTCAACCAAGTGTTTTCCCGTATCGCCGAACACCGTGAA
AAATCTGAACACCTCAAAGCCAAAGTGATCAAAGCAATGATCTACCCTTCTATCGTTTTACTCACCGCTTTGGCCGTCAG
TTGGGTGATGTTAACCATCGTCATTCCTGAGTTTGACAGTATGTTCCAAAGCTTTGGCGCTGAACTGCCTTGGTTTACTC
AACAAGTATTATCACTGTCCTACTTTGCTCGTGAACAGGGCGGAACGATCGCCATAAGCATGGTCAGTTCTCTACTGCTC
TGCAAATGGGCTCAAGCACGTTCGTCTCGTTGTCGGATCTATTTGAGTCGAATCAGTTTGCGCCTCCCTCTCATCGGCCC
AATCATCAGTAAGGCGGCAATCGCTAAGTTCAGCCGCACCATGGCCACCAGCTTTTCGGCTGGCATTCCAATATTATCCT
GTTTGAAATCAGCCGCAAAAACCACCAATCAACTCTATTACCAAGTGGCTCTTGAACGGGTACTAAAAGATACTGCGGCA
GGCATGCCGTTTTATATCGCCATGCGCGACAGCGATACTTTTCCTGAAATGCCATTGCAAATGCTGATGATTGGCGAAGA
GGCAGGTAAGCTTGATGAGATACTCATTAAGATCGCGACCATCTATGAAAAAGAAATCGATGACACCGTTGATAACCTAG
GCAAAATCATTGAACCGGCCATTATCATTTTTCTCAGTATCGTGGTCGGTAGCCTCGTTATCGCTATCTACTTACCAATA
TTTAATTTAATGAACGTTATAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

57.5

98.039

0.564
  pilC Vibrio campbellii strain DS40M4

57.107

98.284

0.561
  pilC Acinetobacter baylyi ADP1

37.745

100

0.377
  pilC Acinetobacter baumannii D1279779

37.01

100

0.37