Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RIM63_RS08965 Genome accession   NZ_CP133952
Coordinates   1833147..1835123 (-) Length   658 a.a.
NCBI ID   WP_317583918.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain HT321     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1828147..1840123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM63_RS08945 (RIM63_08945) amiF 1828663..1829586 (-) 924 WP_043053406.1 ATP-binding cassette domain-containing protein Regulator
  RIM63_RS08950 (RIM63_08950) amiE 1829579..1830649 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  RIM63_RS08955 (RIM63_08955) amiD 1830658..1831584 (-) 927 WP_021321128.1 oligopeptide ABC transporter permease OppC Regulator
  RIM63_RS08960 (RIM63_08960) amiC 1831584..1833083 (-) 1500 WP_014623463.1 ABC transporter permease Regulator
  RIM63_RS08965 (RIM63_08965) amiA3 1833147..1835123 (-) 1977 WP_317583918.1 peptide ABC transporter substrate-binding protein Regulator
  RIM63_RS08970 (RIM63_08970) pbp3 1835431..1836669 (+) 1239 WP_317583919.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  RIM63_RS08975 (RIM63_08975) pbp3 1836981..1838216 (+) 1236 WP_317583921.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  RIM63_RS08980 (RIM63_08980) - 1838299..1839480 (+) 1182 WP_317583922.1 serine hydrolase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72817.23 Da        Isoelectric Point: 5.3467

>NTDB_id=877787 RIM63_RS08965 WP_317583918.1 1833147..1835123(-) (amiA3) [Streptococcus equi subsp. zooepidemicus strain HT321]
MKKSKWLTTLGVAALSVSILAACGNSSSKSSESKIYSYVYSSDPSTLDYISTSKATTNEITTNAVDGLLENDQYGNLIPS
LAKDWKVSKDGLTYTYTLRDGIKWYTSDGEEYADVTAEDFVAGVKHAADVNSDALYIIQDSIKGLNDYLNGKTKDFSTVG
VKALDKKTVQYTLNQPESFWNSKLTYSVLAPVNADFLKSKGKDFGKATDPSSILYNGPFLITALTSKSSIELVKNENYWD
AKNVHLDGVQLTYYDGQDQESLFRNFDDGAYSAARLFPTTPSYKTVKKKYGDSITYGQQNATLYYAAFNLNRTSYNHTKK
TSDSQKSDTQKAILNKDFRQAMTFAFDRIAYQAQSAGEDAANKSLRSTLVPPTFVQIGNKNFGDVVEEHLVTYGSQWENV
NLDDAQDGLYNPEKAKASFEKAKAALQAEGVQFPIHLDYPMDQTATVLLQQARSMKQSIEKTLGTDNVVIDIIELQRDVY
ENISYLAETPAQNDWDISTASGWGPDYVDPSSYLDIFNPALANSQTKSIGLEPGKDLAIASAAGLDEFTKLVTEAGKITD
DLNARYTLYAKAQAALTDSAIYIPTISLGGTPRVTKVVPFSGAFAWAGTKSDTYYKYVKLQDKPVTAKQYDKALAEWKKE
KKKSNEKYNNSLEKHIEK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=877787 RIM63_RS08965 WP_317583918.1 1833147..1835123(-) (amiA3) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATGAAGAAAAGTAAATGGTTGACAACGCTGGGTGTCGCAGCGCTGTCGGTGTCCATCCTGGCAGCCTGTGGAAACAGCTC
AAGTAAAAGCAGTGAATCAAAGATTTATAGCTATGTCTATTCTAGTGATCCAAGTACTTTAGACTATATCAGTACAAGTA
AAGCAACAACAAATGAGATAACAACGAATGCTGTTGATGGGCTTTTGGAAAATGACCAATATGGGAATTTAATCCCCTCT
CTTGCTAAGGATTGGAAGGTCTCAAAGGACGGCTTGACCTATACCTACACGCTTCGTGATGGGATTAAGTGGTACACATC
TGATGGAGAAGAGTATGCAGATGTGACAGCTGAGGATTTTGTAGCTGGAGTAAAGCACGCAGCAGATGTTAACTCTGATG
CCCTATATATCATTCAGGACTCTATTAAAGGCTTAAACGATTACTTGAACGGTAAGACCAAGGACTTTTCAACCGTAGGT
GTCAAAGCACTTGACAAAAAAACAGTTCAGTACACCCTTAATCAACCAGAAAGCTTCTGGAATTCAAAGCTAACCTATAG
TGTCCTAGCTCCGGTAAATGCTGACTTCCTAAAATCAAAGGGCAAGGATTTTGGTAAGGCAACAGATCCATCATCTATCC
TGTATAATGGTCCATTTCTTATCACAGCTTTGACAAGTAAATCCTCTATTGAGCTTGTCAAAAACGAAAATTATTGGGAT
GCTAAGAATGTTCACCTTGATGGTGTTCAATTGACTTATTATGATGGACAGGATCAGGAGTCATTGTTTAGAAACTTTGA
TGACGGTGCTTACTCTGCAGCGAGATTATTCCCAACAACACCTTCTTACAAAACCGTTAAGAAAAAATATGGAGATAGCA
TCACTTACGGACAACAAAATGCTACTCTCTACTATGCGGCATTTAACCTAAACCGTACGTCTTACAACCATACTAAGAAG
ACCTCAGATAGCCAAAAATCAGATACCCAAAAGGCTATCTTAAACAAGGATTTTCGTCAGGCTATGACATTTGCCTTTGA
TAGAATTGCTTATCAGGCGCAATCAGCAGGTGAAGATGCAGCTAACAAATCGCTTCGTAGCACACTTGTGCCACCGACAT
TTGTGCAGATCGGCAACAAGAATTTTGGTGATGTTGTTGAGGAGCACTTGGTGACCTATGGTAGCCAGTGGGAAAATGTA
AATCTAGATGATGCACAGGATGGCTTGTACAATCCTGAGAAGGCAAAAGCATCATTTGAAAAAGCAAAAGCAGCCCTACA
AGCTGAGGGTGTACAGTTCCCAATCCATCTTGATTACCCAATGGATCAAACTGCAACGGTGCTCTTACAGCAGGCTCGCT
CTATGAAGCAGTCAATTGAGAAAACATTAGGAACTGACAATGTTGTGATTGATATTATTGAGCTTCAGAGAGATGTTTAT
GAAAATATTAGTTATCTCGCCGAAACTCCTGCTCAAAATGACTGGGATATTTCAACGGCTTCTGGCTGGGGACCTGATTA
TGTCGACCCATCGTCATATCTTGATATTTTCAACCCAGCGCTTGCAAACTCACAAACAAAATCAATTGGACTTGAGCCAG
GTAAGGATTTGGCCATTGCTAGTGCAGCTGGCTTAGACGAATTTACAAAGCTAGTGACAGAGGCAGGCAAGATTACTGAT
GATCTCAACGCCCGCTACACGCTCTATGCTAAGGCTCAAGCGGCATTGACAGACTCTGCTATTTACATCCCGACTATTTC
ACTTGGTGGAACACCACGTGTAACTAAAGTGGTACCGTTTTCAGGCGCCTTTGCTTGGGCTGGAACTAAGAGTGATACCT
ATTACAAATACGTCAAGCTACAAGATAAGCCTGTAACTGCTAAACAATATGACAAAGCATTAGCCGAGTGGAAAAAAGAA
AAGAAAAAATCTAACGAAAAATATAATAATTCCCTCGAGAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

56.212

100

0.564
  amiA3 Streptococcus thermophilus LMD-9

56.061

100

0.562
  amiA Streptococcus salivarius strain HSISS4

55.842

100

0.559