Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   RIM63_RS08955 Genome accession   NZ_CP133952
Coordinates   1830658..1831584 (-) Length   308 a.a.
NCBI ID   WP_021321128.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain HT321     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1825658..1836584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM63_RS08945 (RIM63_08945) amiF 1828663..1829586 (-) 924 WP_043053406.1 ATP-binding cassette domain-containing protein Regulator
  RIM63_RS08950 (RIM63_08950) amiE 1829579..1830649 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  RIM63_RS08955 (RIM63_08955) amiD 1830658..1831584 (-) 927 WP_021321128.1 oligopeptide ABC transporter permease OppC Regulator
  RIM63_RS08960 (RIM63_08960) amiC 1831584..1833083 (-) 1500 WP_014623463.1 ABC transporter permease Regulator
  RIM63_RS08965 (RIM63_08965) amiA3 1833147..1835123 (-) 1977 WP_317583918.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34532.41 Da        Isoelectric Point: 7.1547

>NTDB_id=877785 RIM63_RS08955 WP_021321128.1 1830658..1831584(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain HT321]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTVVMLVILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVVIGGIWGVSKAVDKVMIEVYNIISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=877785 RIM63_RS08955 WP_021321128.1 1830658..1831584(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTAGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTCTTTAGGCAATTCTTCTCGCGTAAATCAACCGTTGTGATGCTGGTTATTTTAATCGCTATTA
TTTTGATGAGCTTCATCTATCCTATGTTTGCCAACTATGACTTTGGTGATGTGAGCAATATTAATGATTTTTCAAAGCGT
TATATCGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATCTTAATTTCAGTTATTGCTACCATCATCAATATGATTATTGGAGTTGTTATTGGTGGTATTTGGGGTG
TTTCCAAGGCAGTTGATAAGGTAATGATTGAGGTGTATAATATCATCTCTAACCTGCCGCAAATGCTCATTATCATTGTA
TTGACTTATTCTATCGGAGCAGGCTTTTGGAACTTGATTTTTGCCTTTTGTGTGACAGGCTGGATTGGAATTGCTTATTC
GATTCGTGTACAAATCTTGCGCTATCGTGATCTAGAATACAATTTAGCCAGTCAAACCCTAGGAACACCGACCCATAAGA
TTGTCATTAAAAACCTTTTGCCTCAATTGGTTTCAGTGATCGTTTCAATGGTTTCCTTGCTATTGCCGTCCTATATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGGTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTGATTTCAAATTATTC
AAACAATTTAACAACGAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCCTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.649

100

0.756
  amiD Streptococcus thermophilus LMG 18311

75

100

0.75
  amiD Streptococcus thermophilus LMD-9

75

100

0.75