Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   RIM63_RS08960 Genome accession   NZ_CP133952
Coordinates   1831584..1833083 (-) Length   499 a.a.
NCBI ID   WP_014623463.1    Uniprot ID   A0A380JT11
Organism   Streptococcus equi subsp. zooepidemicus strain HT321     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1826584..1838083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM63_RS08945 (RIM63_08945) amiF 1828663..1829586 (-) 924 WP_043053406.1 ATP-binding cassette domain-containing protein Regulator
  RIM63_RS08950 (RIM63_08950) amiE 1829579..1830649 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  RIM63_RS08955 (RIM63_08955) amiD 1830658..1831584 (-) 927 WP_021321128.1 oligopeptide ABC transporter permease OppC Regulator
  RIM63_RS08960 (RIM63_08960) amiC 1831584..1833083 (-) 1500 WP_014623463.1 ABC transporter permease Regulator
  RIM63_RS08965 (RIM63_08965) amiA3 1833147..1835123 (-) 1977 WP_317583918.1 peptide ABC transporter substrate-binding protein Regulator
  RIM63_RS08970 (RIM63_08970) pbp3 1835431..1836669 (+) 1239 WP_317583919.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55634.10 Da        Isoelectric Point: 10.1102

>NTDB_id=877786 RIM63_RS08960 WP_014623463.1 1831584..1833083(-) (amiC) [Streptococcus equi subsp. zooepidemicus strain HT321]
MKKYIFERILRSLVSILLVTALTYTIVFTLVPKSLIFKQDPNYNKMVTTPDKKTNYLNTVFENMGYISYYSSKELQNKAS
KLDPAVTTAPTKANEKIYQKYIASIGNGWKLGRFTESKGFYAVREIPIYERVWNFFSHLVVIDHPWKIKDPKNPNLERYV
RPEIDPAVGPALVGSGTKHKYLIYFNKQFPFIHQNIITFDLGVSYPTYANIPVVQVITQGQGRTLQKEVTFPTGKTKLSS
IDIYSRTYKTPSSLDSKDIANFGKGDAYTNTQNNYAEPSMIANSFKIGIVGVLLSYLFGLPIGMLMAYYKNGWFDRFSTA
ATTFMLALPSIALIYIVRFVGSYLGLPDTFPLLGAGDVRSYVLPALILGILGTPSTVVWFRRYIVDLQGSDFVRFARAKG
LSEFEISKNHLFKQAMVPIVNGIPQAIVGTIAGATLTETVFAFPGMGKMLIDSIKAANNSMVVGLVFIFAVLSILALLVG
DILMTILDPRIKLSGKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=877786 RIM63_RS08960 WP_014623463.1 1831584..1833083(-) (amiC) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATGAAAAAATACATATTTGAACGCATATTGAGGTCGCTTGTTTCAATCCTGCTGGTAACCGCACTAACCTATACTATTGT
CTTTACCTTAGTGCCAAAAAGCTTGATTTTTAAGCAAGACCCTAATTACAATAAGATGGTGACAACACCTGATAAGAAAA
CCAATTATCTAAATACTGTTTTTGAAAATATGGGCTATATTTCCTATTACAGCAGTAAAGAACTGCAGAATAAGGCTTCA
AAGCTTGATCCTGCTGTAACAACTGCACCAACTAAGGCCAATGAAAAAATATATCAAAAATATATTGCTTCTATCGGTAA
TGGTTGGAAGCTTGGGCGCTTTACAGAAAGTAAGGGATTTTATGCGGTTAGAGAGATTCCAATCTATGAGCGCGTGTGGA
ATTTCTTTAGCCATTTGGTTGTCATTGATCACCCATGGAAAATCAAGGATCCAAAAAATCCAAATCTAGAGCGTTATGTG
CGACCAGAAATTGACCCTGCTGTTGGTCCGGCCTTAGTTGGCTCTGGTACTAAGCACAAATACTTGATTTACTTCAACAA
GCAATTCCCATTTATCCATCAAAATATCATAACCTTTGATTTGGGAGTGTCCTATCCAACTTATGCCAACATTCCGGTTG
TTCAGGTTATCACTCAAGGACAAGGAAGAACACTTCAAAAGGAGGTCACCTTCCCAACAGGAAAGACAAAATTATCATCA
ATTGATATTTACTCTAGGACTTATAAAACTCCAAGCTCTTTAGATAGCAAGGATATTGCCAATTTTGGTAAGGGTGATGC
TTATACTAATACACAAAATAACTATGCAGAACCATCTATGATTGCAAATTCCTTTAAGATTGGTATTGTCGGTGTCTTGC
TGTCCTATCTTTTTGGTCTGCCAATTGGTATGCTGATGGCTTATTATAAGAATGGCTGGTTTGACCGCTTTTCAACGGCT
GCCACAACCTTTATGTTAGCCCTGCCAAGCATTGCGCTTATCTATATTGTTCGATTTGTCGGCTCTTATTTGGGCTTGCC
AGATACCTTTCCGCTACTAGGAGCAGGAGATGTTAGGTCTTATGTGCTACCTGCTCTTATATTAGGAATTCTTGGTACAC
CAAGTACAGTAGTTTGGTTCCGGCGCTATATTGTGGACCTGCAAGGCAGTGATTTTGTTCGCTTTGCACGAGCAAAGGGG
CTTTCAGAATTCGAGATTTCAAAAAATCACCTCTTTAAGCAGGCTATGGTGCCTATTGTTAACGGTATTCCACAGGCCAT
TGTCGGAACAATTGCTGGTGCAACCTTGACAGAGACGGTGTTTGCTTTCCCAGGAATGGGTAAAATGCTGATTGATTCCA
TAAAAGCTGCTAATAACTCTATGGTTGTTGGTCTTGTCTTTATTTTTGCTGTTTTATCAATATTAGCCTTGCTAGTAGGT
GATATTCTTATGACAATTTTAGATCCACGTATTAAATTATCAGGTAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JT11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62.124

100

0.621
  amiC Streptococcus thermophilus LMG 18311

62.124

100

0.621
  amiC Streptococcus thermophilus LMD-9

61.924

100

0.619