Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   RIM63_RS08945 Genome accession   NZ_CP133952
Coordinates   1828663..1829586 (-) Length   307 a.a.
NCBI ID   WP_043053406.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain HT321     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1823663..1834586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM63_RS08945 (RIM63_08945) amiF 1828663..1829586 (-) 924 WP_043053406.1 ATP-binding cassette domain-containing protein Regulator
  RIM63_RS08950 (RIM63_08950) amiE 1829579..1830649 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  RIM63_RS08955 (RIM63_08955) amiD 1830658..1831584 (-) 927 WP_021321128.1 oligopeptide ABC transporter permease OppC Regulator
  RIM63_RS08960 (RIM63_08960) amiC 1831584..1833083 (-) 1500 WP_014623463.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34617.84 Da        Isoelectric Point: 6.7072

>NTDB_id=877783 RIM63_RS08945 WP_043053406.1 1828663..1829586(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain HT321]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSSGEICYDGKIINGKKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEDERKEKIKQMMSEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMDPEFVIADEPISALDVSVRAQVLNLLKKIQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFV
NPVHPYTKSLLSAVPIPDPILERQKKLVVYHPEQHDYSVDKPSMVEIKPNHFVWANQAEAERYRKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=877783 RIM63_RS08945 WP_043053406.1 1828663..1829586(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATGTCTGAAAAATTAGTTGAAGTAAAAGACCTGGAGATTTCCTTTGGAGAGGGAAAGAAAAAGTTTGTTGCCGTTAAAAA
TGCCAATTTCTTTATCAATAAAGGAGAAACCTTTTCTCTTGTTGGAGAATCAGGCAGTGGAAAGACAACAATCGGTCGTG
CCATCATTGGTTTAAATGAGACAAGCTCAGGCGAAATCTGCTATGACGGTAAAATTATTAATGGTAAAAAATCAAAATCT
GAAGCTAATGAACTGATTAGAAAAATCCAAATGATTTTTCAGGATCCAGCAGCCAGCCTGAATGAGCGTGCAACGGTTGA
TTATATCATCTCAGAAGGCCTTTATAATTTTAACCTATTCAAAACAGAAGACGAACGTAAAGAAAAAATTAAACAGATGA
TGTCAGAGGTGGGCTTGCTTGCAGAGCACCTGACACGCTACCCTCATGAGTTTTCAGGTGGGCAGCGTCAGCGTATAGGT
ATTGCAAGAGCGCTTGTAATGGATCCGGAGTTTGTTATTGCTGATGAGCCGATTTCAGCTCTTGATGTATCTGTTCGTGC
CCAGGTCTTGAACCTGTTGAAGAAAATACAGGCTGAAAAAGGCTTGACCTATTTATTCATTGCTCATGATTTATCAGTTG
TGCGTTTTATTTCAGATCGTATTGCTGTTATTCACAAAGGAGTAATTGTTGAAGTCGCCGAAACAGAAGAGCTTTTTGTT
AATCCTGTTCACCCTTATACCAAATCTCTGCTGTCAGCGGTACCAATTCCAGATCCCATTTTAGAGCGTCAAAAGAAATT
GGTGGTTTATCATCCAGAGCAGCATGATTATTCTGTTGACAAGCCATCAATGGTGGAAATCAAACCAAATCACTTCGTCT
GGGCTAACCAGGCAGAAGCGGAGCGTTACCGCAAAGAGCTTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

83.007

99.674

0.827
  amiF Streptococcus thermophilus LMD-9

82.68

99.674

0.824
  amiF Streptococcus salivarius strain HSISS4

82.68

99.674

0.824