Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   RIM62_RS05585 Genome accession   NZ_CP133950
Coordinates   1145830..1146504 (-) Length   224 a.a.
NCBI ID   WP_043983576.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain ZHZ211     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140830..1151504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM62_RS05555 (RIM62_05555) - 1141099..1142307 (-) 1209 WP_231148177.1 hypothetical protein -
  RIM62_RS05560 (RIM62_05560) - 1142304..1142684 (-) 381 WP_043029682.1 hypothetical protein -
  RIM62_RS05565 (RIM62_05565) - 1142859..1143110 (-) 252 WP_014622818.1 hypothetical protein -
  RIM62_RS05570 (RIM62_05570) - 1143112..1143495 (-) 384 WP_231148176.1 hypothetical protein -
  RIM62_RS05575 (RIM62_05575) - 1143710..1144144 (-) 435 WP_115266642.1 hypothetical protein -
  RIM62_RS05580 (RIM62_05580) ciaH 1144527..1145837 (-) 1311 WP_159334696.1 cell wall metabolism sensor histidine kinase WalK Regulator
  RIM62_RS05585 (RIM62_05585) ciaR 1145830..1146504 (-) 675 WP_043983576.1 response regulator transcription factor Regulator
  RIM62_RS05590 (RIM62_05590) - 1146931..1149468 (-) 2538 WP_042670590.1 M1 family metallopeptidase -
  RIM62_RS05595 (RIM62_05595) phoU 1149698..1150351 (-) 654 WP_012678018.1 phosphate signaling complex protein PhoU -
  RIM62_RS05600 (RIM62_05600) pstB 1150422..1151180 (-) 759 WP_012678019.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25527.50 Da        Isoelectric Point: 4.5644

>NTDB_id=877652 RIM62_RS05585 WP_043983576.1 1145830..1146504(-) (ciaR) [Streptococcus equi subsp. zooepidemicus strain ZHZ211]
MIKLLLVEDDLSLSNSIFDFLDDFADVTQVFDGDEGLYEAESGIYDLILLDLMLPEKDGFQVLKALREKDIKIPVLIMTA
KESIDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRVGKFNDKSLKFGNLTVDTTRKEVQVNGQAIELLGKELDLLVY
ILQNQNVILPKSQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTDFVNHLQTLRSVGYILKANE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=877652 RIM62_RS05585 WP_043983576.1 1145830..1146504(-) (ciaR) [Streptococcus equi subsp. zooepidemicus strain ZHZ211]
ATGATAAAACTATTATTAGTAGAAGACGATTTAAGCTTGTCAAATTCTATCTTTGATTTTTTAGATGACTTTGCTGATGT
GACGCAGGTTTTTGATGGTGACGAAGGACTCTATGAGGCAGAAAGCGGTATTTATGATTTGATTCTGTTAGATTTGATGC
TGCCTGAAAAGGATGGCTTTCAAGTGTTAAAAGCCTTACGTGAAAAAGACATCAAAATTCCCGTCTTGATCATGACTGCC
AAAGAAAGCATCGATGACAAAGGGCATGGCTTTGAGCTTGGTGCTGATGACTATTTAACCAAGCCCTTTTACCTAGAAGA
ATTAAAAATGCGGATTCAGGCCTTGCTTAAGCGCGTAGGAAAGTTTAATGACAAGAGCCTTAAATTTGGCAACCTGACTG
TAGATACTACCCGTAAAGAGGTACAGGTCAATGGGCAGGCCATAGAGCTATTAGGCAAGGAGCTTGATTTACTAGTCTAT
ATTCTTCAAAATCAAAATGTTATTTTGCCAAAGTCACAAATTTTTGATCGTATCTGGGGCTTTGATAGTGATACCACTAT
CTCTGTTGTAGAGGTCTATGTCTCTAAAATCCGTAAGAAGCTTAAGGGGACAGACTTTGTTAATCATCTTCAAACCTTGA
GAAGTGTAGGATATATCTTAAAAGCTAATGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

85.068

98.661

0.839
  ciaR Streptococcus pneumoniae Rx1

80.995

98.661

0.799
  ciaR Streptococcus pneumoniae D39

80.995

98.661

0.799
  ciaR Streptococcus pneumoniae R6

80.995

98.661

0.799
  ciaR Streptococcus pneumoniae TIGR4

80.995

98.661

0.799
  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.428

100

0.393
  covR Streptococcus salivarius strain HSISS4

35.841

100

0.362