Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   RIM62_RS05580 Genome accession   NZ_CP133950
Coordinates   1144527..1145837 (-) Length   436 a.a.
NCBI ID   WP_159334696.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain ZHZ211     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1139527..1150837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM62_RS05540 (RIM62_05540) rpsT 1139974..1140207 (+) 234 WP_037578328.1 30S ribosomal protein S20 -
  RIM62_RS05545 (RIM62_05545) - 1140406..1140690 (-) 285 WP_012677440.1 hypothetical protein -
  RIM62_RS05550 (RIM62_05550) - 1140710..1141102 (-) 393 WP_043030767.1 hypothetical protein -
  RIM62_RS05555 (RIM62_05555) - 1141099..1142307 (-) 1209 WP_231148177.1 hypothetical protein -
  RIM62_RS05560 (RIM62_05560) - 1142304..1142684 (-) 381 WP_043029682.1 hypothetical protein -
  RIM62_RS05565 (RIM62_05565) - 1142859..1143110 (-) 252 WP_014622818.1 hypothetical protein -
  RIM62_RS05570 (RIM62_05570) - 1143112..1143495 (-) 384 WP_231148176.1 hypothetical protein -
  RIM62_RS05575 (RIM62_05575) - 1143710..1144144 (-) 435 WP_115266642.1 hypothetical protein -
  RIM62_RS05580 (RIM62_05580) ciaH 1144527..1145837 (-) 1311 WP_159334696.1 cell wall metabolism sensor histidine kinase WalK Regulator
  RIM62_RS05585 (RIM62_05585) ciaR 1145830..1146504 (-) 675 WP_043983576.1 response regulator transcription factor Regulator
  RIM62_RS05590 (RIM62_05590) - 1146931..1149468 (-) 2538 WP_042670590.1 M1 family metallopeptidase -
  RIM62_RS05595 (RIM62_05595) phoU 1149698..1150351 (-) 654 WP_012678018.1 phosphate signaling complex protein PhoU -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 49736.38 Da        Isoelectric Point: 9.5602

>NTDB_id=877651 RIM62_RS05580 WP_159334696.1 1144527..1145837(-) (ciaH) [Streptococcus equi subsp. zooepidemicus strain ZHZ211]
MNKLKKELLSDNYTHFFHFFAIFTGIFVVMTIIILQIMRFSVYSTVDSSLISVGQNASNYANRTMARISSFYFDAENNLI
QALPELEASKSLGSSTTNMDIILFSANGTILNSFDAFSNYQSFRLDKSQLNNIVTTQLMNFYGQKEKYHTLTVKVHIKNY
PAVAYMMAVVNVQQLDTANERYEQIIIMVMIVFWLISILASIYLAKWSRKPIMESYAKQKMFVENASHELRTPLAVLQNR
LESLFRKPNETILDNSEHIASSLDEVRNMRILTTNLLNLARRDDGIKPQLVDVDAAFFDTVFENYQLVAEESGKQFISAN
QINRPLKTDKALLRQLMTILFDNAIKYTDHNGMVEVKVRTTDKHLLISVIDNGPGIKDDDKKKIFDRFYRVDKARTRQKG
GFGLGLALAQQIVTSLKGTITVSDNKPTGTIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=877651 RIM62_RS05580 WP_159334696.1 1144527..1145837(-) (ciaH) [Streptococcus equi subsp. zooepidemicus strain ZHZ211]
ATGAATAAACTAAAAAAAGAATTATTGTCCGATAATTATACACATTTTTTTCATTTCTTTGCTATTTTTACAGGCATTTT
TGTTGTCATGACCATCATTATTTTGCAAATCATGAGGTTTAGTGTCTATTCCACAGTAGACAGCAGTCTCATTTCGGTCG
GTCAAAATGCCAGCAACTATGCTAATAGGACCATGGCGAGAATATCTTCCTTTTATTTTGATGCAGAAAATAACCTTATT
CAGGCTCTTCCTGAACTGGAAGCGTCAAAATCACTTGGCTCCTCCACCACTAATATGGATATTATTTTATTTAGTGCTAA
TGGGACGATATTGAACTCCTTTGACGCTTTCTCTAATTACCAAAGCTTTCGTTTAGACAAAAGCCAGCTCAATAACATTG
TCACCACACAGCTGATGAATTTTTATGGGCAAAAGGAGAAATACCATACCCTAACCGTTAAGGTTCACATTAAAAACTAT
CCAGCAGTGGCTTATATGATGGCAGTGGTTAATGTTCAGCAGCTGGATACTGCTAATGAGCGCTATGAACAGATTATTAT
CATGGTTATGATTGTCTTTTGGTTAATTTCGATTTTGGCCAGTATTTATTTGGCTAAGTGGAGCAGAAAGCCAATTATGG
AGAGCTATGCCAAGCAAAAAATGTTTGTAGAAAATGCCAGTCATGAGCTTAGGACTCCTTTAGCGGTGCTGCAAAATCGT
TTGGAATCGCTGTTTAGAAAGCCTAACGAAACCATTTTAGACAATAGCGAGCATATTGCGTCAAGCCTAGATGAGGTTCG
TAATATGAGAATATTAACCACTAATTTGTTAAACCTAGCGAGACGTGATGATGGGATCAAGCCGCAGCTGGTTGATGTTG
ATGCAGCATTTTTTGACACTGTTTTTGAAAATTATCAATTAGTTGCAGAAGAATCAGGCAAGCAGTTTATCTCAGCTAAT
CAGATCAATAGGCCCTTAAAGACGGATAAGGCTTTACTCAGGCAGCTGATGACCATTTTGTTTGATAATGCGATCAAATA
CACTGACCATAACGGTATGGTTGAGGTCAAGGTTAGAACGACTGATAAGCATTTATTGATTTCTGTTATTGATAATGGCC
CAGGGATCAAGGATGATGATAAGAAAAAGATTTTTGATCGCTTTTACCGAGTGGATAAGGCAAGGACACGCCAAAAAGGA
GGCTTTGGACTCGGATTGGCCTTAGCGCAGCAGATCGTTACCTCATTAAAAGGAACGATTACCGTCAGTGATAATAAGCC
TACCGGTACCATATTTGAAGTAAAATTATAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(220-285)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(329-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.666

100

0.578
  ciaH Streptococcus pneumoniae Rx1

51.376

100

0.514
  ciaH Streptococcus pneumoniae D39

51.376

100

0.514
  ciaH Streptococcus pneumoniae R6

51.376

100

0.514
  ciaH Streptococcus pneumoniae TIGR4

51.376

100

0.514