Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   TOL5_RS19740 Genome accession   NZ_AP024708
Coordinates   4255927..4256679 (-) Length   250 a.a.
NCBI ID   WP_121774348.1    Uniprot ID   -
Organism   Acinetobacter sp. Tol 5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4250927..4261679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TOL5_RS19725 (TOL5_38950) aroB 4251513..4252592 (-) 1080 WP_004825381.1 3-dehydroquinate synthase -
  TOL5_RS22555 (TOL5_38960) aroK 4252629..4253171 (-) 543 WP_004825383.1 shikimate kinase AroK -
  TOL5_RS19730 (TOL5_38970) pilQ 4253208..4255379 (-) 2172 WP_121774349.1 type IV pilus secretin PilQ Machinery gene
  TOL5_RS19735 (TOL5_38980) comL 4255400..4255930 (-) 531 WP_005034344.1 pilus assembly protein PilP Machinery gene
  TOL5_RS19740 (TOL5_38990) comO 4255927..4256679 (-) 753 WP_121774348.1 type 4a pilus biogenesis protein PilO Machinery gene
  TOL5_RS19745 (TOL5_39000) pilN 4256676..4257317 (-) 642 WP_004825390.1 PilN domain-containing protein Machinery gene
  TOL5_RS19750 (TOL5_39010) comM 4257317..4258375 (-) 1059 WP_005034346.1 pilus assembly protein PilM Machinery gene
  TOL5_RS19755 (TOL5_39020) ponA 4258539..4261079 (+) 2541 WP_042089092.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28362.03 Da        Isoelectric Point: 4.8604

>NTDB_id=87606 TOL5_RS19740 WP_121774348.1 4255927..4256679(-) (comO) [Acinetobacter sp. Tol 5]
MSREDFEQLDSSVNDAPKKNKMTVEKFFQQFNTLDMNNYGSWPLSVKITCWIFLFFVVCAIGYFLAVRPKLDAIDQARTV
EQNLLNEFKEKDSKLRNLQQYQAQLQQMEANFNQQLEQLPKETEIPSLVEDINVTGVSSGLKFKNIRLEPEVKQEFFIEQ
PISIDATGDYHSFGTFVSSVAALPRIVTLHDFTITGTASEDKKSDVPVIDYTIKAKTYRYIGADEQKAQKTVNQTNPAAP
STPQQGGTPQ

Nucleotide


Download         Length: 753 bp        

>NTDB_id=87606 TOL5_RS19740 WP_121774348.1 4255927..4256679(-) (comO) [Acinetobacter sp. Tol 5]
ATGAGTCGTGAAGATTTTGAGCAATTAGATTCATCGGTAAATGATGCTCCAAAAAAGAATAAAATGACAGTTGAGAAATT
TTTTCAACAGTTCAATACTTTGGATATGAACAACTATGGTAGTTGGCCGCTATCGGTAAAAATTACTTGTTGGATATTTT
TGTTCTTTGTGGTTTGTGCAATTGGCTATTTTCTTGCGGTGAGACCGAAGCTGGATGCAATTGATCAGGCACGCACAGTT
GAACAGAATCTACTGAATGAATTTAAAGAAAAAGACTCTAAGTTACGAAATTTGCAACAATATCAAGCCCAGTTACAACA
AATGGAAGCCAATTTCAATCAACAATTGGAACAGTTGCCAAAAGAAACTGAAATTCCGAGTTTGGTTGAAGATATTAACG
TGACTGGGGTGAGTTCAGGGCTAAAATTTAAAAATATCAGACTTGAACCTGAAGTGAAGCAAGAGTTCTTTATTGAACAA
CCTATTTCCATTGATGCGACAGGGGATTATCACTCATTTGGTACTTTCGTCAGTAGCGTCGCTGCTTTACCACGTATTGT
TACTTTGCATGATTTCACCATTACAGGAACTGCCAGTGAGGATAAAAAATCTGATGTTCCTGTGATTGACTATACCATTA
AGGCAAAAACCTATCGCTATATTGGTGCTGATGAACAGAAAGCTCAAAAAACTGTGAATCAGACAAATCCAGCTGCACCA
TCGACACCACAGCAAGGAGGGACACCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

69.512

98.4

0.684
  pilO Acinetobacter baumannii D1279779

71.179

91.6

0.652

Multiple sequence alignment