Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   WJM95_RS11270 Genome accession   NZ_CP149798
Coordinates   2564594..2566849 (-) Length   751 a.a.
NCBI ID   WP_339129457.1    Uniprot ID   -
Organism   Streptomyces sp. f51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2559594..2571849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM95_RS11255 (WJM95_11255) - 2559869..2560108 (+) 240 WP_339129454.1 heavy-metal-associated domain-containing protein -
  WJM95_RS11260 (WJM95_11260) - 2560200..2562443 (+) 2244 WP_339129455.1 heavy metal translocating P-type ATPase -
  WJM95_RS11265 (WJM95_11265) - 2563017..2564306 (-) 1290 WP_339129456.1 citrate synthase -
  WJM95_RS11270 (WJM95_11270) recD/recD2/recDB 2564594..2566849 (-) 2256 WP_339129457.1 ATP-dependent RecD-like DNA helicase Machinery gene
  WJM95_RS11275 (WJM95_11275) - 2567119..2567949 (-) 831 WP_339129458.1 sugar phosphate isomerase/epimerase family protein -
  WJM95_RS11280 (WJM95_11280) - 2567946..2569103 (-) 1158 WP_339129459.1 dihydrodipicolinate synthase family protein -
  WJM95_RS11285 (WJM95_11285) - 2569100..2570251 (-) 1152 WP_339129460.1 Gfo/Idh/MocA family oxidoreductase -
  WJM95_RS11290 (WJM95_11290) - 2570566..2571615 (+) 1050 WP_339135481.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81387.96 Da        Isoelectric Point: 6.9755

>NTDB_id=875304 WJM95_RS11270 WP_339129457.1 2564594..2566849(-) (recD/recD2/recDB) [Streptomyces sp. f51]
MTDQAGAAQTGERRLATLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGSLLGAQVGESLRMEGRWGSHPQYGKQF
TVENYTTVLPATVQGIRRYLGSGLVKGIGPVFADRITGHFGLDTLRIIEEEPKRLIEVPGLGPKRTGRIADAWEEQKAIK
EVMLFLQTVEVSTSIAVRIYKKYGDASISVVRNQPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSTD
QGHCYLPEERLIADAVKLLQVDTGLVIECLAELAAPAQEGEDPGVVREKVPGPDGGDPVTAVYLVPFHRAELSLSAQLLR
LLRSERDRMPGFRDVVWDRALTWLKGRTGAELAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSIVELARAKGAKVLLA
APTGRAAKRLAELTGSEASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQ
LPSVGAGEVLRDLLAERGPVPAVRLTKVFRQAQQSGVVTNAHRINSGQHPLTDGMKDFFLFVEEDTEEAGRLTVDVAARR
IPAKFGLDPRRDIQVLAPMHRGPAGAGHLNGLLQQAITPGRPDLAEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVG
VVTSLDQVEQRLTVRTDEDEEVPYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVV
LVGSRKAIGQAVRTVSAGRRCTALDFRLSGP

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=875304 WJM95_RS11270 WP_339129457.1 2564594..2566849(-) (recD/recD2/recDB) [Streptomyces sp. f51]
ATGACCGATCAGGCGGGGGCCGCCCAGACGGGCGAGCGGCGGCTGGCCACGCTCGAAGGCGTGCTCGAACGCATCACGTA
CGCCAACGAGGAGAACGGCTACACGGTCGCCCGGGTCGACACCGGCCGGGGCGCGGGCGATCTGCTCACCGTCGTCGGCT
CCCTGCTCGGCGCCCAGGTCGGCGAGTCCCTGCGCATGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTC
ACCGTGGAGAACTACACGACGGTCCTCCCCGCCACCGTCCAGGGCATCCGCCGCTATCTCGGCTCCGGCCTGGTCAAGGG
CATCGGACCGGTCTTCGCCGACCGCATCACCGGACACTTCGGCCTGGACACCCTGCGGATCATCGAGGAGGAGCCGAAAC
GGCTCATCGAGGTCCCCGGGCTCGGACCCAAGCGCACGGGAAGGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAG
GAGGTCATGCTCTTCCTCCAGACCGTGGAGGTCTCCACCTCCATCGCGGTCCGCATCTACAAGAAGTACGGCGACGCGTC
GATCTCGGTGGTCAGGAACCAGCCCTACCGCCTGGCCTCCGACGTCTGGGGCATCGGCTTCCTCACCGCGGACAAGATCG
CCCAGTCCGTGGGCATCCCGCACGACAGCCCCGAGCGCGTCAAGGCCGGCCTCCAGTACGCCCTGTCCCAGTCCACCGAC
CAGGGCCACTGCTACCTCCCCGAGGAACGGCTGATCGCCGACGCGGTGAAGCTGCTCCAGGTCGACACCGGCCTGGTCAT
CGAGTGCCTGGCCGAGCTGGCGGCCCCCGCGCAGGAGGGCGAGGACCCCGGAGTCGTCCGGGAGAAGGTGCCGGGCCCGG
ACGGCGGCGACCCGGTGACGGCGGTCTACCTCGTCCCCTTCCACCGCGCCGAACTCTCCCTCTCCGCACAGCTGCTGCGC
CTGCTGCGCAGCGAGCGGGACCGGATGCCCGGCTTCCGTGACGTGGTCTGGGACAGGGCGCTGACCTGGCTGAAGGGGCG
CACGGGCGCGGAGCTGGCACCCGAGCAGGAGGCGGCCGTCCGGCTCGCGCTCACCGAGAAGGTCGCGGTCCTGACCGGAG
GCCCGGGCTGCGGCAAGTCGTTCACGGTCCGCTCGATCGTGGAACTGGCCCGCGCCAAGGGAGCCAAGGTGCTCCTCGCG
GCGCCCACCGGCCGCGCCGCCAAGCGTCTCGCGGAGCTGACCGGATCCGAGGCCTCCACCGTGCACCGGCTGCTGGAGCT
CAAGCCGGGCGGCGACGCGGCCTACGACAGGGACCGCCCGCTGGACGCCGACCTGGTGGTCGTGGACGAGGCGTCCATGC
TCGACCTGCTGCTCGCCAACAAGCTGGTCAAGGCGGTGCCGCCGGGCGCCCATCTGCTCTTCGTCGGTGACGTGGACCAG
CTGCCGAGCGTCGGCGCGGGGGAGGTGCTGCGCGATCTGCTCGCCGAGCGGGGGCCGGTCCCCGCCGTGCGCCTGACCAA
GGTCTTCCGCCAGGCCCAGCAGTCCGGGGTGGTGACCAACGCGCACCGGATCAACTCCGGGCAGCACCCGCTCACCGACG
GCATGAAGGACTTCTTCCTCTTCGTCGAGGAGGACACCGAGGAGGCCGGGCGGCTCACCGTGGACGTGGCGGCCCGGCGG
ATTCCGGCCAAGTTCGGACTCGACCCCCGCCGGGACATCCAGGTCCTCGCCCCCATGCACCGCGGCCCGGCCGGCGCCGG
CCATCTGAACGGACTGCTCCAGCAGGCCATCACCCCCGGCCGCCCGGACCTCGCCGAGAAGCGGTTCGGCGGCCGCGTGT
TCCGGGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGACAAGGGCGAGAACGGCGTCTTCAACGGCACGGTGGGT
GTCGTCACCTCCCTCGACCAGGTCGAACAGCGGCTGACGGTGCGCACCGACGAGGACGAGGAGGTGCCGTACGAATTCGA
CGAGCTGGACGAGCTGGCCCACGCCTACGCGGTGACGATCCACCGTTCCCAGGGCAGCGAGTACCCGGCGGTGGTGATCC
CGGTGACCACGGGCGCCTGGATGATGCTCCAGCGCAATCTGCTCTACACGGCGGTCACCCGGGCCAAGAAGCTGGTCGTT
CTCGTCGGTTCGCGCAAGGCGATCGGCCAGGCGGTGCGTACGGTGTCCGCGGGACGCCGGTGCACGGCCCTGGATTTCCG
GCTCTCCGGTCCGTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-722)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

Helix-hairpin-helix domain (HHH_5)

(105-154)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-655)

AAA domain (AAA_30)

(351-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.658

100

0.361