Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   STNY_RS17045 Genome accession   NZ_AP024684
Coordinates   3670084..3671814 (-) Length   576 a.a.
NCBI ID   WP_130767797.1    Uniprot ID   -
Organism   Stenotrophomonas pavanii strain Y     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3665084..3676814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STNY_RS17030 (STNY_R33830) sucC 3665301..3666470 (-) 1170 WP_005418614.1 ADP-forming succinate--CoA ligase subunit beta -
  STNY_RS17035 (STNY_R33840) - 3666876..3668489 (+) 1614 WP_130767798.1 PAS domain-containing sensor histidine kinase -
  STNY_RS17040 (STNY_R33850) pilR 3668544..3669917 (+) 1374 WP_049471425.1 sigma-54 dependent transcriptional regulator Regulator
  STNY_RS17045 (STNY_R33860) pilB 3670084..3671814 (-) 1731 WP_130767797.1 type IV-A pilus assembly ATPase PilB Machinery gene
  STNY_RS17050 (STNY_R33870) - 3671864..3674896 (-) 3033 WP_130767796.1 fused MFS/spermidine synthase -
  STNY_RS17055 (STNY_R33880) - 3675012..3675419 (-) 408 WP_338061741.1 pilin -
  STNY_RS17060 (STNY_R33890) pilE 3675563..3675991 (-) 429 WP_130767794.1 pilin Machinery gene

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 62213.09 Da        Isoelectric Point: 5.8722

>NTDB_id=87505 STNY_RS17045 WP_130767797.1 3670084..3671814(-) (pilB) [Stenotrophomonas pavanii strain Y]
MNAVTTANLVGITGLARRLVQDGALDEASARDAMAKAAAARQPLPTWFAQNKVVGAAQLAAANAVEFGMPLFDVSTFDAS
QNAMSLVSEELLRKHNVLPLFKRGGKLFVGTSNPTHSLDEIKFHTNLVVEPILVDEDQIRRTLEQWHASHDTLGDALGGD
DDGIGNLDVSGGDEDISGGGDSGIDAKGDDTPVVKFVNKVLVDAIRKGASDIHFEPYEDDYRVRLRIDGLLKMVARAPVK
LNQRIAARLKVMAQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEPDQQKLF
LDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDI
IMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRPSNLPEH
ALLAEGFTQAQLDAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIATIVLAGGNALQIAEAAQQIGVNDLRQSALKKA
AAGITSLAEINRVTKD

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=87505 STNY_RS17045 WP_130767797.1 3670084..3671814(-) (pilB) [Stenotrophomonas pavanii strain Y]
ATGAACGCCGTAACCACCGCCAATCTCGTCGGCATCACCGGCCTGGCCCGTCGCCTGGTCCAGGATGGCGCCCTGGACGA
GGCTTCTGCCCGCGACGCCATGGCCAAGGCCGCTGCGGCCCGCCAGCCGCTGCCGACCTGGTTCGCGCAGAACAAGGTGG
TCGGGGCGGCCCAGTTGGCGGCGGCCAACGCGGTCGAGTTCGGCATGCCGCTGTTCGACGTGTCCACGTTCGACGCCAGC
CAGAACGCAATGAGCCTGGTCAGCGAGGAACTGCTGCGCAAGCACAACGTGCTGCCGCTGTTCAAACGCGGCGGCAAGCT
GTTCGTGGGCACCAGCAATCCGACCCATTCGCTGGACGAGATCAAGTTCCACACCAACCTGGTGGTGGAGCCGATCCTGG
TGGATGAAGACCAGATCCGCCGCACGCTCGAGCAGTGGCATGCCAGCCATGACACGCTGGGCGACGCGCTGGGCGGTGAC
GACGATGGCATTGGCAACCTGGATGTGTCCGGCGGTGACGAGGACATTTCCGGGGGCGGCGACTCCGGCATCGACGCCAA
GGGCGACGACACCCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGACGCGATCCGCAAGGGCGCCTCGGACATCCACT
TCGAGCCCTATGAAGACGACTACCGCGTGCGCCTGCGCATCGATGGCCTGCTGAAGATGGTCGCGCGCGCGCCGGTGAAG
CTGAACCAGCGCATCGCCGCACGCCTGAAGGTGATGGCGCAGCTGGACATCGCCGAGAAGCGAGTGCCGCAGGACGGACG
CATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGCGTGAGCACCCTTCCGACCCTGTTCGGCGAGAAGGTGG
TGCTGCGTATCCTGGACGGCAGCGCGGCCAAGCTGGGCATCGACAAGCTGGGGTACGAGCCGGACCAGCAGAAGCTGTTT
CTGGACGCCATCCACAAGCCCTATGGCATGGTGCTGGTGACCGGCCCGACCGGTTCGGGCAAGACTGTGTCGCTGTATAC
CGCGCTGGGCATCCTCAACGACGAGACGCGCAACATCTCCACCGCCGAAGACCCGGTGGAAATCCGCTTGCCCGGCGTCA
ACCAGGTGCAGCAGAACAACAAGCGCGGCATGACCTTCGCCGCGGCACTGCGCTCGTTCCTGCGACAGGATCCGGACATC
ATCATGGTCGGCGAAATCCGCGACCTGGAGACGGCCGAGATCGCGATCAAGGCCGCCCAGACCGGCCACATGGTGCTGTC
CACGCTGCATACCAACGATGCGCCGCAGACCATCGCGCGCCTGATGAACATGGGCATTGCGCCGTACAACATCACCAGCT
CGGTGACCCTGGTGATCGCCCAGCGCCTGGCGCGCCGGCTGTGCAACAACTGCAAGCGCCCGTCCAACCTGCCCGAGCAT
GCGCTGCTGGCTGAAGGCTTCACCCAGGCGCAGCTGGATGCGGGTATCGAGCTGTACGAGGCGGTCGGCTGTGACGAATG
CACCGAGGGCTACAAGGGCCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAGATCGCCACGATCGTGCTGGCCG
GTGGCAATGCGTTGCAGATTGCCGAGGCCGCGCAGCAGATCGGGGTGAACGACCTGCGCCAGTCGGCGTTGAAGAAGGCG
GCGGCCGGGATCACCAGCCTGGCCGAGATCAACCGCGTTACCAAGGATTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(49-150)

Type II/IV secretion system protein (T2SSE)

(199-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

54.452

100

0.552
  pilB Acinetobacter baumannii D1279779

54.922

100

0.552
  pilB Legionella pneumophila strain ERS1305867

52.021

98.785

0.514
  pilB Vibrio cholerae strain A1552

48.776

99.306

0.484
  pilF Neisseria gonorrhoeae MS11

48.944

98.611

0.483
  pilB Vibrio parahaemolyticus RIMD 2210633

45.629

99.306

0.453
  pilB Vibrio campbellii strain DS40M4

45.518

98.785

0.45

Multiple sequence alignment