Detailed information NTG0087504

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: STNY_RS17040
• Genome accession: NZ_AP024684
• Coordinates: 3668544..3669917 (+)
• Length: 457 a.a.
• NCBI ID: WP_049471425.1
• Uniprot ID: A0AB34TH98
• Organism: Stenotrophomonas pavanii strain Y
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3663544..3674917

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STNY_RS17025 (STNY_R33820)	sucD	3664401..3665276 (-)	876	WP_005418610.1	succinate--CoA ligase subunit alpha	-
STNY_RS17030 (STNY_R33830)	sucC	3665301..3666470 (-)	1170	WP_005418614.1	ADP-forming succinate--CoA ligase subunit beta	-
STNY_RS17035 (STNY_R33840)	-	3666876..3668489 (+)	1614	WP_130767798.1	PAS domain-containing sensor histidine kinase	-
STNY_RS17040 (STNY_R33850)	pilR	3668544..3669917 (+)	1374	WP_049471425.1	sigma-54 dependent transcriptional regulator	Regulator
STNY_RS17045 (STNY_R33860)	pilB	3670084..3671814 (-)	1731	WP_130767797.1	type IV-A pilus assembly ATPase PilB	Machinery gene
STNY_RS17050 (STNY_R33870)	-	3671864..3674896 (-)	3033	WP_130767796.1	fused MFS/spermidine synthase	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49557.84 Da
• Isoelectric Point: 6.2985

>NTDB_id=87504 STNY_RS17040 WP_049471425.1 3668544..3669917(+) (pilR) [Stenotrophomonas pavanii strain Y]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAHHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNTERPAPGPAAEQGARLLGDSPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAATEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPE
LAASVLARLARSHGRPTPLLAPSALDALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRTPGSAAPAEAV
VDLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=87504 STNY_RS17040 WP_049471425.1 3668544..3669917(+) (pilR) [Stenotrophomonas pavanii strain Y]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTACTGACGCTCGGCCGCAT
GGGGCTGCGCATCAGTACGGCAGCCAACCTTGCCGAAGCGCGCGAACTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCGGACGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCACCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGCCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAACTGAACAACACCGAGCGCCCCGCGCCCGGCCCCGCCG
CCGAACAGGGCGCACGCCTGCTGGGCGATTCGCCGGCCATGGACGTGCTGCGTACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGCCCAGGGCGCCCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGTGAGTTCTTCGGCCACCGCA
AGGGTAGCTTCAGCGGCGCCCACGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTCGACGAA
GTGGCCGAGCTGCCCCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGCGCGGTGGGCGCTGC
CACCGAAGAACCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAACTGGTCGAGGACGGGCGCTTCC
GCCACGACCTCTACTACCGCATCAACGTGATCGAACTGAGGGTGCCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCGGAA
CTGGCCGCATCGGTGCTGGCTCGGCTGGCCCGCAGCCATGGCCGCCCGACGCCGCTGCTGGCGCCGTCGGCGTTGGACGC
GCTGGCCCAGTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAACGCGCGCTGGCACTGGCCGAGGAAG
ACTGCATCGGCGCCGACGACCTGCGCCTGCCGCAGCATGCCCCGCGCACGCCCGGCAGCGCAGCGCCCGCCGAAGCCGTG
GTGGACCTGCAACCCGGCAGCGCCGCCCTGCCCTCGTACATCGAACAGCTCGAGCGCAGCGCCATCCAGCGCGCGCTGGA
AGAAAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.719	99.781	0.626
pilR	Acinetobacter baumannii strain A118	47.948	100	0.486