Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RDV59_RS09035 Genome accession   NZ_CP133476
Coordinates   1942654..1943349 (-) Length   231 a.a.
NCBI ID   WP_022496133.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1937654..1948349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS09020 (RDV59_09020) - 1938465..1939010 (-) 546 WP_013991031.1 GNAT family N-acetyltransferase -
  RDV59_RS09025 (RDV59_09025) - 1939076..1940338 (-) 1263 WP_002884638.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RDV59_RS09030 (RDV59_09030) comEC/celB 1940424..1942664 (-) 2241 WP_038676610.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RDV59_RS09035 (RDV59_09035) comEA 1942654..1943349 (-) 696 WP_022496133.1 helix-hairpin-helix domain-containing protein Machinery gene
  RDV59_RS09040 (RDV59_09040) - 1943458..1944213 (-) 756 WP_022496132.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  RDV59_RS09045 (RDV59_09045) - 1944343..1945278 (+) 936 WP_052124418.1 polysaccharide deacetylase family protein -
  RDV59_RS09050 (RDV59_09050) - 1945328..1946092 (+) 765 WP_038676615.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RDV59_RS09055 (RDV59_09055) - 1946096..1946365 (+) 270 WP_060775884.1 GIY-YIG nuclease family protein -
  RDV59_RS09060 (RDV59_09060) - 1946493..1948079 (-) 1587 WP_004183188.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24362.26 Da        Isoelectric Point: 4.7321

>NTDB_id=874687 RDV59_RS09035 WP_022496133.1 1942654..1943349(-) (comEA) [Streptococcus salivarius strain LMG 11489]
MKEKIIAYVKDNRLFVSVIALLMVIFCFFLWMTCGAGNSMEAETSYTDVTALSTSSSKQSSQSLSEASSQSKTEGSEKDK
SKVTVDVKGAVANPGVYTLKASARVTDAIKAAGGMTEDADAKSVNLAASLSDEEVVYVATKDENLSVLGQSGTGQVSDKG
GQTSAKDGKINLNTATSEELQTISGIGAKRAEDIIAYRESHGGFQSVDDLKNVSGIGDKTLEKIRESLYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=874687 RDV59_RS09035 WP_022496133.1 1942654..1943349(-) (comEA) [Streptococcus salivarius strain LMG 11489]
GTGAAGGAAAAGATTATAGCCTATGTCAAAGATAATCGTCTGTTTGTGAGTGTCATCGCTTTACTGATGGTGATTTTTTG
CTTCTTTCTATGGATGACTTGTGGTGCGGGCAACAGTATGGAGGCGGAGACGTCTTATACAGATGTGACAGCTTTGTCAA
CCTCCTCATCCAAACAAAGCTCACAGTCTCTTTCTGAGGCGTCTTCCCAGTCAAAGACTGAAGGAAGTGAAAAGGATAAG
TCAAAAGTAACAGTAGATGTTAAGGGGGCTGTGGCTAATCCGGGTGTTTATACCTTAAAAGCAAGCGCTAGGGTAACTGA
TGCCATCAAAGCCGCTGGGGGAATGACTGAGGATGCGGATGCTAAGAGTGTTAACTTAGCTGCAAGCCTGTCGGACGAAG
AGGTTGTCTATGTGGCAACTAAGGATGAAAACCTTTCTGTTCTTGGTCAATCAGGAACTGGTCAGGTTTCTGACAAAGGA
GGGCAAACTAGTGCTAAGGATGGCAAAATTAACTTAAACACAGCGACTTCAGAGGAGTTGCAAACTATTTCTGGGATTGG
AGCTAAGCGTGCTGAGGATATCATTGCCTATCGTGAAAGTCATGGAGGTTTTCAATCCGTAGATGACTTGAAAAATGTCT
CAGGAATTGGTGATAAAACTTTAGAAAAAATCAGAGAGTCCCTCTATGTGGCTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(168-228)

SLBB domain (SLBB)

(85-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

91.775

100

0.918
  comEA/celA/cilE Streptococcus mitis SK321

42.358

99.134

0.42
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

41.228

98.701

0.407
  comEA/celA/cilE Streptococcus mitis NCTC 12261

40.789

98.701

0.403
  comEA/celA/cilE Streptococcus pneumoniae Rx1

40.789

98.701

0.403
  comEA/celA/cilE Streptococcus pneumoniae D39

40.789

98.701

0.403
  comEA/celA/cilE Streptococcus pneumoniae R6

40.789

98.701

0.403