Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR1   Type   Regulator
Locus tag   RDV58_RS09250 Genome accession   NZ_CP133475
Coordinates   1868654..1869556 (+) Length   300 a.a.
NCBI ID   WP_002262469.1    Uniprot ID   Q8DVT6
Organism   Streptococcus mutans strain LMG 14558     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1863654..1874556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS09225 (RDV58_09210) rimI 1864481..1864915 (-) 435 WP_002262632.1 ribosomal protein S18-alanine N-acetyltransferase -
  RDV58_RS09230 (RDV58_09215) tsaB 1864915..1865601 (-) 687 WP_002262633.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  RDV58_RS09235 (RDV58_09220) - 1865612..1866070 (-) 459 WP_002262634.1 MarR family winged helix-turn-helix transcriptional regulator -
  RDV58_RS09240 (RDV58_09225) - 1866244..1867290 (+) 1047 WP_002262467.1 SDR family oxidoreductase -
  RDV58_RS09245 (RDV58_09230) - 1867311..1868279 (+) 969 WP_032499022.1 aldo/keto reductase -
  RDV58_RS09250 (RDV58_09235) comR/comR1 1868654..1869556 (+) 903 WP_002262469.1 XRE family transcriptional regulator Regulator
  RDV58_RS09255 (RDV58_09240) - 1870063..1870200 (-) 138 WP_002262470.1 hypothetical protein -
  RDV58_RS09260 (RDV58_09245) - 1870178..1870417 (-) 240 WP_002262471.1 hypothetical protein -
  RDV58_RS09265 (RDV58_09250) - 1870435..1870584 (-) 150 WP_002271212.1 hypothetical protein -
  RDV58_RS09270 (RDV58_09255) - 1870789..1872027 (-) 1239 WP_002262473.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme -
  RDV58_RS09275 (RDV58_09260) - 1872043..1872951 (-) 909 WP_002262474.1 hypothetical protein -
  RDV58_RS09280 (RDV58_09265) - 1872962..1873672 (-) 711 WP_002262475.1 SDR family NAD(P)-dependent oxidoreductase -
  RDV58_RS09285 (RDV58_09270) - 1873659..1874402 (-) 744 WP_002262476.1 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 35007.28 Da        Isoelectric Point: 4.5017

>NTDB_id=874619 RDV58_RS09250 WP_002262469.1 1868654..1869556(+) (comR/comR1) [Streptococcus mutans strain LMG 14558]
MTIKEDLGRRIKAERNRKQLTQSLLCGDETKLTIRQLQRIEGGQSLPTLEKLEFIADRLGTKIADLLEGSDIQLPDDYWE
LKGQIVKFPTYADKERLQQKQELIEEIYDKYFDILPEDELLFLDLSENILDSFHEKDIPNIEEIYDDAFEQVLKKETFAF
NDYLYMSYFLQKCGKTADYDQTTFKLLEQKLLKQELTVDELYNIELLIAVMEASGVYALHNDYQNLLPLMKKAQRIIDKA
QLHTYKPPLLELEAKYYVKVVKDKKKAKELYQQALVMGEVLGDPVIIADVKMEMANDGID

Nucleotide


Download         Length: 903 bp        

>NTDB_id=874619 RDV58_RS09250 WP_002262469.1 1868654..1869556(+) (comR/comR1) [Streptococcus mutans strain LMG 14558]
ATGACAATAAAAGAAGATTTAGGACGGCGGATTAAAGCAGAAAGGAATCGCAAGCAACTCACACAAAGCCTTTTGTGCGG
AGATGAAACAAAACTGACCATTCGACAGCTTCAGCGGATTGAGGGCGGGCAGTCTTTGCCGACCCTAGAAAAATTAGAAT
TCATTGCTGATCGCTTAGGAACTAAAATAGCCGACCTGCTGGAAGGCAGCGATATCCAGCTGCCAGATGATTACTGGGAG
CTAAAGGGGCAGATTGTTAAATTTCCCACCTATGCTGATAAGGAAAGACTTCAGCAAAAACAGGAGCTGATCGAAGAAAT
CTATGACAAATACTTTGATATCCTGCCTGAGGATGAACTGCTCTTTTTAGATTTGTCAGAGAATATCCTAGACAGTTTTC
ATGAAAAAGACATTCCTAACATTGAGGAGATTTACGACGATGCCTTTGAGCAAGTCCTCAAAAAGGAGACCTTTGCCTTT
AATGACTATCTTTACATGAGCTATTTTTTACAAAAGTGCGGAAAAACAGCGGACTATGATCAGACAACTTTCAAGTTGCT
TGAGCAAAAATTGCTCAAGCAAGAGCTAACAGTAGACGAACTTTATAATATTGAACTTTTGATTGCTGTTATGGAGGCAT
CAGGTGTTTATGCCCTTCATAATGATTACCAGAATCTTCTTCCTTTAATGAAGAAGGCTCAGCGAATTATTGATAAGGCT
CAGCTTCACACCTATAAACCGCCACTTTTAGAACTTGAAGCCAAGTACTATGTCAAGGTTGTCAAGGATAAGAAAAAAGC
TAAGGAACTCTATCAGCAAGCCTTGGTGATGGGCGAAGTTCTAGGTGATCCTGTTATAATTGCAGATGTTAAGATGGAGA
TGGCAAATGATGGGATAGACTAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

75.667

100

0.757
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

69.333

100

0.693
  comR Streptococcus salivarius strain HSISS4

42.475

99.667

0.423
  comR Streptococcus thermophilus LMD-9

42.14

99.667

0.42
  comR Streptococcus thermophilus LMG 18311

42.14

99.667

0.42
  comR Streptococcus salivarius SK126

41.472

99.667

0.413