Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   RDV54_RS06940 Genome accession   NZ_CP133471
Coordinates   1461858..1462520 (-) Length   220 a.a.
NCBI ID   WP_000649953.1    Uniprot ID   A0AAX2L3H3
Organism   Streptococcus mitis strain LMG 14557     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1456858..1467520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS06915 (RDV54_06915) - 1457008..1457274 (-) 267 WP_001278169.1 Veg family protein -
  RDV54_RS06920 (RDV54_06920) dnaB 1457276..1458628 (-) 1353 WP_000852498.1 replicative DNA helicase -
  RDV54_RS06925 (RDV54_06925) rplI 1458672..1459124 (-) 453 WP_000864218.1 50S ribosomal protein L9 -
  RDV54_RS06930 (RDV54_06930) - 1459121..1461094 (-) 1974 WP_000715136.1 DHH family phosphoesterase -
  RDV54_RS06935 (RDV54_06935) hpf 1461230..1461778 (-) 549 WP_000599102.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RDV54_RS06940 (RDV54_06940) comFC/cflB 1461858..1462520 (-) 663 WP_000649953.1 ComF family protein Machinery gene
  RDV54_RS06945 (RDV54_06945) comFA/cflA 1462517..1463815 (-) 1299 WP_000867722.1 DEAD/DEAH box helicase Machinery gene
  RDV54_RS06950 (RDV54_06950) - 1463872..1464507 (+) 636 WP_000395748.1 YigZ family protein -
  RDV54_RS06955 (RDV54_06955) - 1464523..1464966 (+) 444 WP_000863906.1 PH domain-containing protein -
  RDV54_RS06960 (RDV54_06960) cysK 1465063..1465989 (+) 927 WP_000029880.1 cysteine synthase A -
  RDV54_RS06965 (RDV54_06965) tsf 1466111..1467151 (-) 1041 WP_000808076.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25218.29 Da        Isoelectric Point: 6.0413

>NTDB_id=874502 RDV54_RS06940 WP_000649953.1 1461858..1462520(-) (comFC/cflB) [Streptococcus mitis strain LMG 14557]
MKCLLCGQTMKAVLTFSSLLLLKNDASCLCLDCDSTFERIGEENCPNCMKTDLSMKCQDCQLWCKEGVEVSHRAIFIYNQ
AMKDFFSRYKFDGDFLLRKVFASVLSEELKKYKEYQFVVIPLSPERLLERGFNQVEGLVEAAGFAYLDLLEKREERASSS
KSRSERLETEFPFFIKSGVTIPKKILLIDDIYTTGTTINRVKKLLEEAGAEDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=874502 RDV54_RS06940 WP_000649953.1 1461858..1462520(-) (comFC/cflB) [Streptococcus mitis strain LMG 14557]
ATGAAGTGTTTATTATGTGGGCAGACTATGAAGGCTGTTTTAACTTTCAGTAGTCTTTTACTTCTGAAGAATGATGCCTC
CTGTCTTTGTTTAGATTGTGATTCTACTTTTGAGAGGATTGGAGAAGAGAACTGCCCAAACTGTATGAAAACAGATTTGT
CAATGAAGTGTCAAGACTGTCAACTTTGGTGTAAAGAAGGAGTTGAGGTCAGTCATAGAGCGATTTTTATTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTTTTAAGAAAAGTTTTTGCTTCAGTTTTAAGTGA
GGAGTTAAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGAAAGATTGCTCGAGAGGGGATTTAACC
AGGTTGAAGGTTTAGTTGAAGCAGCAGGGTTTGCGTATCTGGATTTATTAGAAAAGAGAGAAGAGCGAGCTAGTTCTTCT
AAAAGTCGCTCAGAGCGTTTGGAGACAGAATTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATTTACACTACTGGAACAACTATAAATCGTGTGAAGAAGCTGTTGGAAGAAGCGGGTGCTGAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(169-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

100

100

1
  comFC/cflB Streptococcus mitis SK321

93.182

100

0.932
  comFC/cflB Streptococcus pneumoniae TIGR4

91.818

100

0.918
  comFC/cflB Streptococcus pneumoniae Rx1

91.364

100

0.914
  comFC/cflB Streptococcus pneumoniae D39

91.364

100

0.914
  comFC/cflB Streptococcus pneumoniae R6

91.364

100

0.914
  comFC Bacillus subtilis subsp. subtilis str. 168

35.526

100

0.368