Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RDV53_RS04420 Genome accession   NZ_CP133470
Coordinates   905558..906226 (+) Length   222 a.a.
NCBI ID   WP_005695053.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 900558..911226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS04395 (RDV53_04395) - 901582..902400 (+) 819 WP_005695047.1 Cof-type HAD-IIB family hydrolase -
  RDV53_RS04400 (RDV53_04400) crcB 902401..902796 (+) 396 WP_005695048.1 fluoride efflux transporter CrcB -
  RDV53_RS04405 (RDV53_04405) recX 902771..903223 (-) 453 WP_032827499.1 recombination regulator RecX -
  RDV53_RS04410 (RDV53_04410) recA 903293..904348 (-) 1056 WP_005695051.1 recombinase RecA Machinery gene
  RDV53_RS04415 (RDV53_04415) - 904485..905327 (-) 843 WP_005695052.1 patatin family protein -
  RDV53_RS04420 (RDV53_04420) sxy/tfoX 905558..906226 (+) 669 WP_005695053.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25484.96 Da        Isoelectric Point: 10.3912

>NTDB_id=874439 RDV53_RS04420 WP_005695053.1 905558..906226(+) (sxy/tfoX) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MKILTIPNDNIIRVCNLLNQLIGDVTSKNLFTGYGLFHKDKDMFAVWINNKVYLRAKGELSVKLKGLGCKAFATNELNKR
FVLSDYYALTESILKDNVLMRTLIILSITQIRKEKLESALSKIGRIRDLPNLSIKYERALKKVGIDNVDILRQIGAENAI
VRLKKADIGATEAFYWRLRGALENRNCEFYTEKEKEKGLNKLNEILSANGFRRCKRTLKKVE

Nucleotide


Download         Length: 669 bp        

>NTDB_id=874439 RDV53_RS04420 WP_005695053.1 905558..906226(+) (sxy/tfoX) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGAAAATCCTAACAATACCCAATGATAATATTATCAGAGTGTGTAATTTGCTAAATCAACTGATTGGAGATGTAACAAG
CAAAAACCTATTTACTGGATATGGATTATTCCATAAAGATAAGGATATGTTTGCTGTTTGGATTAATAATAAGGTTTACT
TGAGGGCTAAAGGTGAACTTTCTGTAAAATTAAAAGGGCTGGGCTGCAAAGCCTTTGCAACAAATGAACTCAATAAACGC
TTTGTGTTATCTGATTATTATGCTTTAACTGAAAGTATCTTGAAAGATAATGTCTTAATGAGAACTTTGATCATTCTTTC
AATAACTCAAATAAGGAAGGAAAAACTCGAGTCTGCGCTCTCTAAGATTGGACGGATTCGTGATTTACCGAATTTATCTA
TTAAATATGAACGAGCACTAAAGAAAGTCGGTATTGATAATGTGGATATCTTACGACAAATAGGTGCTGAAAATGCAATT
GTTCGTTTGAAAAAAGCGGATATTGGTGCAACTGAAGCTTTTTATTGGCGACTTCGTGGCGCTTTAGAAAATCGTAATTG
TGAGTTTTATACTGAGAAAGAAAAGGAGAAAGGGCTTAATAAACTTAATGAAATACTTTCTGCAAATGGATTTAGGCGCT
GTAAACGGACTTTAAAAAAGGTTGAATAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(125-198)

TfoX N-terminal domain (TfoX_N)

(17-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

58.373

94.144

0.55